Atomistry » Mercury » PDB 4q81-5c9l » 4rzb
Atomistry »
  Mercury »
    PDB 4q81-5c9l »
      4rzb »

Mercury in PDB 4rzb: The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Formimino-L-Aspartate, Soaked with Mercury

Protein crystallography data

The structure of The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Formimino-L-Aspartate, Soaked with Mercury, PDB code: 4rzb was solved by A.A.Fedorov, E.V.Fedorov, R.Marti-Arbona, F.M.Raushel, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.99 / 1.86
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 101.560, 141.831, 86.415, 90.00, 107.18, 90.00
R / Rfree (%) 16 / 17.6

Other elements in 4rzb:

The structure of The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Formimino-L-Aspartate, Soaked with Mercury also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Mercury Binding Sites:

The binding sites of Mercury atom in the The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Formimino-L-Aspartate, Soaked with Mercury (pdb code 4rzb). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 6 binding sites of Mercury where determined in the The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Formimino-L-Aspartate, Soaked with Mercury, PDB code: 4rzb:
Jump to Mercury binding site number: 1; 2; 3; 4; 5; 6;

Mercury binding site 1 out of 6 in 4rzb

Go back to Mercury Binding Sites List in 4rzb
Mercury binding site 1 out of 6 in the The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Formimino-L-Aspartate, Soaked with Mercury


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Formimino-L-Aspartate, Soaked with Mercury within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg503

b:20.8
occ:0.76
O A:HOH1083 2.3 29.2 1.0
SG A:CYS243 2.4 17.6 1.0
OG A:SER247 3.4 17.6 1.0
CB A:CYS243 3.4 17.6 1.0
CE1 A:PHE164 3.5 17.5 1.0
CA A:CYS243 3.7 17.9 1.0
CG A:TRP254 3.8 15.2 1.0
CB A:SER247 3.8 17.7 1.0
CD1 A:TRP254 3.9 15.6 1.0
O A:CYS243 3.9 18.2 1.0
CD1 A:PHE164 3.9 17.7 1.0
CB A:TRP254 4.1 15.0 1.0
CD2 A:TRP254 4.2 15.0 1.0
C A:CYS243 4.2 18.1 1.0
NE1 A:TRP254 4.3 15.9 1.0
CZ A:PHE164 4.3 17.5 1.0
CE2 A:TRP254 4.5 15.5 1.0
CD1 A:LEU208 4.6 14.4 1.0
CE3 A:TRP254 4.9 14.8 1.0
N A:CYS243 5.0 18.0 1.0

Mercury binding site 2 out of 6 in 4rzb

Go back to Mercury Binding Sites List in 4rzb
Mercury binding site 2 out of 6 in the The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Formimino-L-Aspartate, Soaked with Mercury


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Formimino-L-Aspartate, Soaked with Mercury within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg504

b:25.0
occ:0.42
O A:HOH1057 2.3 30.0 1.0
SG A:CYS102 2.5 19.7 0.5
O A:HOH739 2.9 24.6 1.0
O A:HOH758 3.0 30.7 1.0
HG A:HG505 3.1 39.1 0.4
CB A:CYS102 3.2 19.7 0.5
CB A:CYS102 3.3 19.6 0.5
O A:GLU98 3.5 20.4 1.0
CG A:GLU98 3.8 20.7 1.0
C A:GLU98 3.9 20.8 1.0
OE2 A:GLU98 4.1 20.5 1.0
SG A:CYS102 4.1 19.4 0.5
CA A:VAL99 4.2 16.9 1.0
N A:VAL99 4.3 16.9 1.0
CD A:GLU98 4.3 20.8 1.0
O A:HOH699 4.4 19.7 1.0
CB A:GLU98 4.5 21.1 1.0
CA A:CYS102 4.6 19.4 0.5
O A:HOH971 4.7 38.6 1.0
CA A:CYS102 4.7 19.4 0.5
O A:HOH934 4.7 40.6 1.0
CA A:GLU98 4.8 21.0 1.0
N A:CYS102 4.9 19.7 0.5
N A:CYS102 4.9 19.7 0.5
CB A:ALA144 5.0 15.4 1.0
O A:VAL99 5.0 15.6 1.0

Mercury binding site 3 out of 6 in 4rzb

Go back to Mercury Binding Sites List in 4rzb
Mercury binding site 3 out of 6 in the The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Formimino-L-Aspartate, Soaked with Mercury


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Formimino-L-Aspartate, Soaked with Mercury within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg505

b:39.1
occ:0.36
SG A:CYS102 2.4 19.4 0.5
O A:HOH812 2.6 37.0 1.0
SG A:CYS102 2.7 19.7 0.5
O A:HOH758 3.0 30.7 1.0
O A:HOH934 3.0 40.6 1.0
HG A:HG504 3.1 25.0 0.4
O A:HOH790 3.2 35.2 1.0
CB A:CYS102 3.2 19.6 0.5
CB A:CYS102 3.3 19.7 0.5
CB A:ALA147 3.9 20.5 1.0
O A:HOH739 4.3 24.6 1.0
O A:HOH699 4.4 19.7 1.0
CA A:CYS102 4.6 19.4 0.5
CA A:CYS102 4.7 19.4 0.5
CB A:SER440 4.9 18.9 1.0
O A:HOH1057 4.9 30.0 1.0

Mercury binding site 4 out of 6 in 4rzb

Go back to Mercury Binding Sites List in 4rzb
Mercury binding site 4 out of 6 in the The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Formimino-L-Aspartate, Soaked with Mercury


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Formimino-L-Aspartate, Soaked with Mercury within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg503

b:22.0
occ:0.76
O B:HOH1014 2.3 27.5 1.0
SG B:CYS243 2.4 19.2 1.0
CB B:CYS243 3.4 19.2 1.0
OG B:SER247 3.5 19.5 1.0
CE1 B:PHE164 3.5 15.3 1.0
CA B:CYS243 3.7 19.4 1.0
CG B:TRP254 3.7 17.7 1.0
CB B:SER247 3.8 19.8 1.0
CD1 B:TRP254 3.8 17.8 1.0
O B:CYS243 3.9 19.5 1.0
CD1 B:PHE164 4.0 15.7 1.0
CB B:TRP254 4.1 17.5 1.0
CD2 B:TRP254 4.2 17.8 1.0
C B:CYS243 4.2 19.3 1.0
NE1 B:TRP254 4.3 18.0 1.0
CD1 B:LEU208 4.4 14.4 1.0
CZ B:PHE164 4.4 15.1 1.0
CE2 B:TRP254 4.5 18.0 1.0
CE3 B:TRP254 4.9 17.8 1.0

Mercury binding site 5 out of 6 in 4rzb

Go back to Mercury Binding Sites List in 4rzb
Mercury binding site 5 out of 6 in the The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Formimino-L-Aspartate, Soaked with Mercury


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Formimino-L-Aspartate, Soaked with Mercury within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg504

b:43.6
occ:0.50
SG B:CYS102 2.3 19.8 0.6
SG B:CYS102 2.7 19.7 0.4
HG B:HG505 3.0 32.6 0.4
O B:HOH903 3.0 32.4 1.0
CB B:CYS102 3.1 19.8 0.6
CB B:CYS102 3.2 19.9 0.4
CB B:ALA147 4.0 22.2 1.0
O B:HOH775 4.2 34.3 1.0
O B:HOH726 4.2 28.6 1.0
O B:HOH692 4.2 18.9 1.0
CA B:CYS102 4.5 19.6 0.4
CA B:CYS102 4.6 19.6 0.6
CB B:SER440 4.9 22.2 1.0
OG B:SER440 5.0 22.1 1.0

Mercury binding site 6 out of 6 in 4rzb

Go back to Mercury Binding Sites List in 4rzb
Mercury binding site 6 out of 6 in the The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Formimino-L-Aspartate, Soaked with Mercury


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 6 of The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Formimino-L-Aspartate, Soaked with Mercury within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg505

b:32.6
occ:0.36
SG B:CYS102 2.5 19.7 0.4
O B:HOH726 2.5 28.6 1.0
O B:HOH797 2.7 41.8 1.0
HG B:HG504 3.0 43.6 0.5
O B:HOH903 3.1 32.4 1.0
CB B:CYS102 3.2 19.9 0.4
CB B:CYS102 3.3 19.8 0.6
O B:GLU98 3.5 21.5 1.0
CG B:GLU98 3.9 21.6 1.0
C B:GLU98 3.9 21.6 1.0
SG B:CYS102 4.0 19.8 0.6
OE2 B:GLU98 4.1 22.4 1.0
CA B:VAL99 4.2 16.9 1.0
N B:VAL99 4.3 16.8 1.0
CD B:GLU98 4.3 21.9 1.0
O B:HOH692 4.4 18.9 1.0
CA B:CYS102 4.5 19.6 0.4
CB B:GLU98 4.5 21.8 1.0
CA B:CYS102 4.6 19.6 0.6
CA B:GLU98 4.8 21.7 1.0
N B:CYS102 4.8 19.6 0.4
N B:CYS102 4.8 19.6 0.6
CB B:ALA144 4.9 20.4 1.0
CA B:ALA144 4.9 20.4 1.0
CG2 B:VAL99 5.0 18.5 1.0

Reference:

A.A.Fedorov, R.Marti-Arbona, V.V.Nemmara, D.Hitchcock, E.V.Fedorov, S.C.Almo, F.M.Raushel. Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa. Biochemistry V. 54 890 2015.
ISSN: ISSN 0006-2960
PubMed: 25559274
DOI: 10.1021/BI501299Y
Page generated: Sun Dec 13 19:12:00 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy