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Mercury in PDB 4trg: The Snl Domain of Sidc

Protein crystallography data

The structure of The Snl Domain of Sidc, PDB code: 4trg was solved by F.S.Hsu, X.Luo, J.Qiu, Y.Teng, J.Jin, M.B.Smolka, Z.Q.Luo, Y.Mao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.00 / 2.59
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 61.533, 133.438, 170.249, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 23.1

Mercury Binding Sites:

The binding sites of Mercury atom in the The Snl Domain of Sidc (pdb code 4trg). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 4 binding sites of Mercury where determined in the The Snl Domain of Sidc, PDB code: 4trg:
Jump to Mercury binding site number: 1; 2; 3; 4;

Mercury binding site 1 out of 4 in 4trg

Go back to Mercury Binding Sites List in 4trg
Mercury binding site 1 out of 4 in the The Snl Domain of Sidc


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of The Snl Domain of Sidc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg601

b:68.1
occ:1.00
SG A:CYS17 2.1 14.6 1.0
CB A:CYS17 2.9 16.3 1.0
O A:ASP18 3.1 22.5 1.0
CB A:GLN72 3.7 22.9 1.0
CD1 A:LEU20 3.8 23.5 1.0
N A:ASP18 3.8 20.6 1.0
C A:CYS17 3.8 19.9 1.0
CA A:CYS17 3.9 21.2 1.0
CB A:LEU20 3.9 22.6 1.0
NE2 A:GLN72 4.0 23.1 1.0
C A:ASP18 4.1 22.9 1.0
CD2 A:LEU73 4.2 26.4 1.0
C A:GLN72 4.2 26.1 1.0
O A:GLN72 4.3 26.2 1.0
O A:CYS17 4.4 18.8 1.0
N A:LEU73 4.4 27.4 1.0
CG A:LEU20 4.5 24.1 1.0
CA A:ASP18 4.5 22.9 1.0
CA A:GLN72 4.6 24.9 1.0
CD A:GLN72 4.6 24.1 1.0
CG A:LEU73 4.7 26.2 1.0
CG A:GLN72 4.8 24.0 1.0
N A:LEU20 4.8 23.1 1.0
CA A:LEU73 4.9 27.1 1.0
O A:ALA69 5.0 21.8 1.0

Mercury binding site 2 out of 4 in 4trg

Go back to Mercury Binding Sites List in 4trg
Mercury binding site 2 out of 4 in the The Snl Domain of Sidc


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of The Snl Domain of Sidc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg602

b:76.1
occ:1.00
CB A:CYS46 2.9 17.5 1.0
SG A:CYS46 3.1 17.7 0.3
O B:ASP315 3.5 14.3 1.0
C B:ASP315 3.6 15.9 1.0
CB B:ASP315 3.8 19.1 1.0
N B:ALA316 3.9 16.1 1.0
CA B:ALA316 4.1 16.7 1.0
CA B:ASP315 4.3 17.4 1.0
CA A:CYS46 4.4 18.7 1.0
CB B:ALA316 4.6 16.7 1.0
NE2 A:GLN47 4.7 30.3 1.0
CD1 A:ILE140 4.7 24.0 1.0
C A:CYS46 5.0 19.5 1.0

Mercury binding site 3 out of 4 in 4trg

Go back to Mercury Binding Sites List in 4trg
Mercury binding site 3 out of 4 in the The Snl Domain of Sidc


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of The Snl Domain of Sidc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg601

b:0.6
occ:1.00
SG B:CYS17 1.4 26.7 1.0
CB B:CYS17 2.6 38.6 1.0
O B:ASP18 3.1 46.6 1.0
C B:CYS17 3.8 53.5 1.0
CA B:CYS17 3.8 46.7 1.0
CB B:GLN72 3.8 57.3 1.0
N B:ASP18 3.8 52.1 1.0
NE2 B:GLN72 3.9 50.6 1.0
CD1 B:LEU20 3.9 77.4 1.0
CB B:LEU20 3.9 67.3 1.0
C B:ASP18 4.1 51.1 1.0
O B:CYS17 4.3 61.7 1.0
CD2 B:LEU73 4.4 61.6 1.0
C B:GLN72 4.4 60.5 1.0
O B:GLN72 4.5 62.8 1.0
CA B:ASP18 4.5 52.7 1.0
CG B:LEU20 4.6 73.7 1.0
CD B:GLN72 4.6 54.7 1.0
N B:LEU73 4.6 62.1 1.0
CA B:GLN72 4.8 57.9 1.0
CG B:GLN72 4.8 57.9 1.0
N B:LEU20 4.8 53.1 1.0
CG B:LEU73 4.9 66.9 1.0
CD2 B:TYR76 4.9 61.2 1.0
N B:CYS17 4.9 57.2 1.0

Mercury binding site 4 out of 4 in 4trg

Go back to Mercury Binding Sites List in 4trg
Mercury binding site 4 out of 4 in the The Snl Domain of Sidc


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of The Snl Domain of Sidc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg602

b:0.3
occ:0.77
CB B:CYS46 2.8 54.4 1.0
SG B:CYS46 3.1 89.6 1.0
O A:ASP315 3.6 51.2 1.0
C A:ASP315 3.6 46.5 1.0
CB A:ASP315 3.7 49.5 1.0
N A:ALA316 3.9 44.8 1.0
CA B:CYS46 4.1 44.7 1.0
CA A:ALA316 4.1 48.2 1.0
CA A:ASP315 4.2 47.1 1.0
CB A:ALA316 4.6 48.5 1.0
CD1 A:LEU299 4.6 55.7 1.0
CD1 B:ILE140 4.7 52.5 1.0
C B:CYS46 4.7 43.1 1.0
CG A:ASP315 4.9 54.0 1.0
CG1 B:ILE140 4.9 49.6 1.0
O B:CYS46 5.0 43.7 1.0

Reference:

F.Hsu, X.Luo, J.Qiu, Y.B.Teng, J.Jin, M.B.Smolka, Z.Q.Luo, Y.Mao. The Legionella Effector Sidc Defines A Unique Family of Ubiquitin Ligases Important For Bacterial Phagosomal Remodeling. Proc.Natl.Acad.Sci.Usa V. 111 10538 2014.
ISSN: ESSN 1091-6490
PubMed: 25006264
DOI: 10.1073/PNAS.1402605111
Page generated: Sun Dec 13 19:12:00 2020

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