Atomistry » Mercury » PDB 4q81-5c9l » 5a40
Atomistry »
  Mercury »
    PDB 4q81-5c9l »
      5a40 »

Mercury in PDB 5a40: Crystal Structure of A Dual Topology Fluoride Ion Channel.

Protein crystallography data

The structure of Crystal Structure of A Dual Topology Fluoride Ion Channel., PDB code: 5a40 was solved by R.B.Stockbridge, L.Kolmakova-Partensky, T.Shane, A.Koide, S.Koide, C.Miller, S.Newstead, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 114.708 / 3.60
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 146.790, 183.700, 72.880, 90.00, 90.00, 90.00
R / Rfree (%) 23.48 / 26.97

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of A Dual Topology Fluoride Ion Channel. (pdb code 5a40). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 4 binding sites of Mercury where determined in the Crystal Structure of A Dual Topology Fluoride Ion Channel., PDB code: 5a40:
Jump to Mercury binding site number: 1; 2; 3; 4;

Mercury binding site 1 out of 4 in 5a40

Go back to Mercury Binding Sites List in 5a40
Mercury binding site 1 out of 4 in the Crystal Structure of A Dual Topology Fluoride Ion Channel.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of A Dual Topology Fluoride Ion Channel. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Hg1092

b:0.1
occ:1.00
SG A:CYS94 2.9 89.6 1.0
OD1 A:ASP91 3.5 93.8 1.0
NE2 E:HIS81 3.7 0.5 1.0
CE1 E:HIS81 3.7 0.2 1.0
OH E:TYR75 3.9 98.9 1.0
CE1 E:TYR73 3.9 64.0 1.0
CD1 E:TYR73 4.1 64.1 1.0
CG A:ARG95 4.1 68.0 1.0
CD A:ARG95 4.2 68.8 1.0
CD2 E:HIS81 4.2 0.9 1.0
ND1 E:HIS81 4.2 0.1 1.0
O A:ASP91 4.3 71.4 1.0
CB A:CYS94 4.4 72.3 1.0
N A:ARG95 4.5 60.4 1.0
CG E:HIS81 4.5 96.8 1.0
CZ E:TYR73 4.7 66.7 1.0
CG A:ASP91 4.7 95.6 1.0
C A:CYS94 4.8 61.1 1.0
CA A:ARG95 4.8 62.2 1.0
CZ E:TYR75 4.8 85.5 1.0
CB A:ARG95 4.9 65.7 1.0
CG E:TYR73 4.9 63.1 1.0

Mercury binding site 2 out of 4 in 5a40

Go back to Mercury Binding Sites List in 5a40
Mercury binding site 2 out of 4 in the Crystal Structure of A Dual Topology Fluoride Ion Channel.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of A Dual Topology Fluoride Ion Channel. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Hg1092

b:0.4
occ:1.00
SG B:CYS94 3.0 85.1 1.0
OD1 B:ASP91 3.2 93.4 1.0
OH F:TYR75 3.7 97.7 1.0
NE2 F:HIS81 3.8 97.5 1.0
CE1 F:HIS81 3.9 96.4 1.0
CE1 F:TYR73 3.9 59.4 1.0
CD B:ARG95 4.0 72.3 1.0
CD1 F:TYR73 4.0 59.4 1.0
O B:ASP91 4.0 65.5 1.0
CG B:ARG95 4.0 71.2 1.0
CB B:CYS94 4.3 76.4 1.0
CD2 F:HIS81 4.3 87.5 1.0
ND1 F:HIS81 4.4 93.2 1.0
N B:ARG95 4.4 64.3 1.0
CG B:ASP91 4.4 94.7 1.0
CG F:HIS81 4.6 84.1 1.0
CZ F:TYR73 4.7 64.8 1.0
CZ F:TYR75 4.7 87.9 1.0
CA B:ARG95 4.7 63.9 1.0
C B:CYS94 4.7 67.6 1.0
C B:ASP91 4.7 66.0 1.0
CA B:ASP91 4.7 76.3 1.0
CG F:TYR73 4.7 64.9 1.0
CB B:ARG95 4.7 67.2 1.0

Mercury binding site 3 out of 4 in 5a40

Go back to Mercury Binding Sites List in 5a40
Mercury binding site 3 out of 4 in the Crystal Structure of A Dual Topology Fluoride Ion Channel.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of A Dual Topology Fluoride Ion Channel. within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Hg1092

b:0.4
occ:1.00
SG C:CYS94 3.0 84.2 1.0
OD1 C:ASP91 3.3 82.1 1.0
NE2 G:HIS81 3.5 0.8 1.0
CE1 G:TYR73 3.8 63.3 1.0
CE1 G:HIS81 3.9 0.2 1.0
CD2 G:HIS81 3.9 99.5 1.0
CD1 G:TYR73 4.0 61.8 1.0
OH G:TYR75 4.0 64.8 1.0
CD C:ARG95 4.2 73.7 1.0
CG C:ARG95 4.2 72.2 1.0
O C:ASP91 4.2 51.2 1.0
CB C:CYS94 4.3 69.4 1.0
N C:ARG95 4.5 66.3 1.0
CG C:ASP91 4.6 79.9 1.0
CZ G:TYR73 4.6 60.7 1.0
ND1 G:HIS81 4.6 96.2 1.0
CG G:HIS81 4.6 90.3 1.0
CG G:TYR73 4.8 59.8 1.0
C C:CYS94 4.8 64.3 1.0
CA C:ARG95 4.8 65.4 1.0
CA C:ASP91 4.9 62.0 1.0
CB C:ARG95 4.9 69.8 1.0
C C:ASP91 4.9 54.5 1.0
CZ G:TYR75 5.0 60.8 1.0

Mercury binding site 4 out of 4 in 5a40

Go back to Mercury Binding Sites List in 5a40
Mercury binding site 4 out of 4 in the Crystal Structure of A Dual Topology Fluoride Ion Channel.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Crystal Structure of A Dual Topology Fluoride Ion Channel. within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Hg1092

b:0.9
occ:1.00
SG D:CYS94 3.1 91.5 1.0
OD1 D:ASP91 3.4 83.9 1.0
NE2 H:HIS81 3.6 96.0 1.0
CE1 H:HIS81 3.7 98.4 1.0
CE1 H:TYR73 3.9 61.7 1.0
OH H:TYR75 3.9 59.7 1.0
CD1 H:TYR73 4.0 62.5 1.0
CG D:ARG95 4.2 62.2 1.0
CD D:ARG95 4.2 58.2 1.0
CD2 H:HIS81 4.2 84.1 1.0
ND1 H:HIS81 4.2 92.7 1.0
O D:ASP91 4.4 52.3 1.0
CG H:HIS81 4.5 80.4 1.0
CB D:CYS94 4.5 76.2 1.0
N D:ARG95 4.6 67.3 1.0
CZ H:TYR73 4.6 56.0 1.0
CG D:ASP91 4.6 84.2 1.0
CZ H:TYR75 4.8 58.9 1.0
CG H:TYR73 4.8 57.8 1.0
CA D:ARG95 4.9 65.9 1.0
C D:CYS94 4.9 69.6 1.0
CB D:ARG95 5.0 64.9 1.0

Reference:

R.B.Stockbridge, L.Kolmakova-Partensky, T.Shane, A.Koide, S.Koide, C.Miller, S.Newstead. Crystal Structures of A Double-Barrelled Fluoride Ion Channel. Nature V.525 548 2015.
ISSN: ISSN 0028-0836
PubMed: 26344196
DOI: 10.1038/NATURE14981
Page generated: Sun Dec 13 19:12:12 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy