Mercury in PDB 5awg: Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli

The structure of Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli, PDB code: 5awg was solved by K.Hirabayashi, K.Wada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.94 / 4.28
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	119.848, 139.379, 124.414, 90.00, 113.55, 90.00
R / Rfree (%)	29.5 / 34

The binding sites of Mercury atom in the Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli (pdb code 5awg). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 4 binding sites of Mercury where determined in the Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli, PDB code: 5awg:
Jump to Mercury binding site number: 1; 2; 3; 4;

Mercury binding site 1 out of 4 in the Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg600 b:0.5 occ:1.00 SG A:CYS405 2.5 0.8 1.0 O A:CYS405 2.6 96.1 1.0 OG1 A:THR418 2.7 0.7 1.0 CG2 A:THR418 3.2 93.2 1.0 CB A:CYS405 3.4 93.1 1.0 CB A:THR418 3.4 95.0 1.0 OG A:SER407 3.4 83.2 1.0 C A:CYS405 3.5 86.0 1.0 CB A:ALA435 4.0 88.9 1.0 CA A:CYS405 4.1 87.2 1.0 N A:ASP406 4.5 86.5 1.0 CB A:SER407 4.7 94.4 1.0 CA A:ASP406 4.8 83.4 1.0 C A:ASP406 4.8 84.6 1.0 CA A:THR418 4.8 81.2 1.0 N A:SER407 4.8 82.5 1.0 CA A:ALA435 4.9 81.9 1.0

Mercury binding site 2 out of 4 in the Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ B:Hg600 b:0.8 occ:1.00 N B:SER359 2.5 0.4 1.0 SG B:CYS358 2.5 0.3 1.0 C B:CYS358 2.7 0.9 1.0 CB B:CYS358 2.8 0.0 1.0 CD2 B:LEU349 2.8 0.2 1.0 CA B:SER359 3.1 99.7 1.0 CD1 B:LEU349 3.2 88.4 1.0 CA B:CYS358 3.2 0.3 1.0 C B:SER359 3.3 88.3 1.0 O B:CYS358 3.4 0.5 1.0 O B:GLY328 3.5 92.0 1.0 O B:SER359 3.5 94.1 1.0 CG B:LEU349 3.6 0.3 1.0 N B:HIS360 4.1 84.0 1.0 C B:GLY328 4.5 84.2 1.0 N B:CYS358 4.5 88.2 1.0 CB B:SER359 4.5 88.9 1.0 CB B:LEU349 4.6 0.9 1.0 CB B:HIS360 4.9 81.7 1.0 CD2 B:HIS360 4.9 82.5 1.0 CA B:HIS360 5.0 76.6 1.0

Mercury binding site 3 out of 4 in the Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ E:Hg600 b:0.4 occ:1.00 O E:CYS405 2.3 99.0 1.0 OG1 E:THR418 2.4 0.6 1.0 OG E:SER407 2.8 0.5 1.0 SG E:CYS405 2.9 0.1 1.0 C E:CYS405 3.1 97.8 1.0 CB E:THR418 3.4 0.3 1.0 CG2 E:THR418 3.5 0.3 1.0 N E:ASP406 3.6 0.3 1.0 CA E:ASP406 3.6 0.4 1.0 C E:ASP406 3.7 0.1 1.0 CB E:CYS405 3.8 95.9 1.0 N E:SER407 3.8 0.8 1.0 CA E:CYS405 4.1 96.8 1.0 CB E:SER407 4.1 0.8 1.0 CB E:ALA435 4.2 96.5 1.0 O E:ASP406 4.3 0.6 1.0 CA E:SER407 4.5 0.3 1.0 CA E:THR418 4.7 94.4 1.0 CD1 F:LEU349 4.9 0.6 1.0

Mercury binding site 4 out of 4 in the Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ F:Hg600 b:0.4 occ:0.94 SG F:CYS358 2.6 97.2 1.0 CD1 F:LEU349 2.6 0.6 1.0 N F:SER359 2.8 0.9 1.0 CG F:LEU349 3.1 0.7 1.0 CB F:CYS358 3.1 96.6 1.0 C F:CYS358 3.1 0.9 1.0 CD2 F:LEU349 3.2 0.5 1.0 CA F:SER359 3.3 0.7 1.0 C F:SER359 3.4 0.9 1.0 CA F:CYS358 3.6 0.8 1.0 O F:SER359 3.6 0.9 1.0 O F:CYS358 3.6 0.6 1.0 O F:GLY328 3.9 89.8 1.0 N F:HIS360 4.0 0.3 1.0 CB F:HIS360 4.2 0.7 1.0 CD1 F:ILE317 4.5 87.9 1.0 CB F:LEU349 4.6 0.4 1.0 CG F:HIS360 4.6 0.7 1.0 CA F:HIS360 4.8 97.6 1.0 CB F:SER359 4.8 86.7 1.0 N F:CYS358 4.9 0.7 1.0 C F:GLY328 4.9 91.5 1.0

K.Hirabayashi, E.Yuda, N.Tanaka, S.Katayama, K.Iwasaki, T.Matsumoto, G.Kurisu, F.W.Outten, K.Fukuyama, Y.Takahashi, K.Wada. Functional Dynamics Revealed By the Structure of the Sufbcd Complex, A Novel Atp-Binding Cassette (Abc) Protein That Serves As A Scaffold For Iron-Sulfur Cluster Biogenesis J.Biol.Chem. V. 290 29717 2015.
ISSN: ESSN 1083-351X
PubMed: 26472926
DOI: 10.1074/JBC.M115.680934