Atomistry » Mercury » PDB 4q81-5c9l » 5awg
Atomistry »
  Mercury »
    PDB 4q81-5c9l »
      5awg »

Mercury in PDB 5awg: Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli

Protein crystallography data

The structure of Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli, PDB code: 5awg was solved by K.Hirabayashi, K.Wada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.94 / 4.28
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 119.848, 139.379, 124.414, 90.00, 113.55, 90.00
R / Rfree (%) 29.5 / 34

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli (pdb code 5awg). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 4 binding sites of Mercury where determined in the Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli, PDB code: 5awg:
Jump to Mercury binding site number: 1; 2; 3; 4;

Mercury binding site 1 out of 4 in 5awg

Go back to Mercury Binding Sites List in 5awg
Mercury binding site 1 out of 4 in the Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg600

b:0.5
occ:1.00
SG A:CYS405 2.5 0.8 1.0
O A:CYS405 2.6 96.1 1.0
OG1 A:THR418 2.7 0.7 1.0
CG2 A:THR418 3.2 93.2 1.0
CB A:CYS405 3.4 93.1 1.0
CB A:THR418 3.4 95.0 1.0
OG A:SER407 3.4 83.2 1.0
C A:CYS405 3.5 86.0 1.0
CB A:ALA435 4.0 88.9 1.0
CA A:CYS405 4.1 87.2 1.0
N A:ASP406 4.5 86.5 1.0
CB A:SER407 4.7 94.4 1.0
CA A:ASP406 4.8 83.4 1.0
C A:ASP406 4.8 84.6 1.0
CA A:THR418 4.8 81.2 1.0
N A:SER407 4.8 82.5 1.0
CA A:ALA435 4.9 81.9 1.0

Mercury binding site 2 out of 4 in 5awg

Go back to Mercury Binding Sites List in 5awg
Mercury binding site 2 out of 4 in the Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg600

b:0.8
occ:1.00
N B:SER359 2.5 0.4 1.0
SG B:CYS358 2.5 0.3 1.0
C B:CYS358 2.7 0.9 1.0
CB B:CYS358 2.8 0.0 1.0
CD2 B:LEU349 2.8 0.2 1.0
CA B:SER359 3.1 99.7 1.0
CD1 B:LEU349 3.2 88.4 1.0
CA B:CYS358 3.2 0.3 1.0
C B:SER359 3.3 88.3 1.0
O B:CYS358 3.4 0.5 1.0
O B:GLY328 3.5 92.0 1.0
O B:SER359 3.5 94.1 1.0
CG B:LEU349 3.6 0.3 1.0
N B:HIS360 4.1 84.0 1.0
C B:GLY328 4.5 84.2 1.0
N B:CYS358 4.5 88.2 1.0
CB B:SER359 4.5 88.9 1.0
CB B:LEU349 4.6 0.9 1.0
CB B:HIS360 4.9 81.7 1.0
CD2 B:HIS360 4.9 82.5 1.0
CA B:HIS360 5.0 76.6 1.0

Mercury binding site 3 out of 4 in 5awg

Go back to Mercury Binding Sites List in 5awg
Mercury binding site 3 out of 4 in the Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Hg600

b:0.4
occ:1.00
O E:CYS405 2.3 99.0 1.0
OG1 E:THR418 2.4 0.6 1.0
OG E:SER407 2.8 0.5 1.0
SG E:CYS405 2.9 0.1 1.0
C E:CYS405 3.1 97.8 1.0
CB E:THR418 3.4 0.3 1.0
CG2 E:THR418 3.5 0.3 1.0
N E:ASP406 3.6 0.3 1.0
CA E:ASP406 3.6 0.4 1.0
C E:ASP406 3.7 0.1 1.0
CB E:CYS405 3.8 95.9 1.0
N E:SER407 3.8 0.8 1.0
CA E:CYS405 4.1 96.8 1.0
CB E:SER407 4.1 0.8 1.0
CB E:ALA435 4.2 96.5 1.0
O E:ASP406 4.3 0.6 1.0
CA E:SER407 4.5 0.3 1.0
CA E:THR418 4.7 94.4 1.0
CD1 F:LEU349 4.9 0.6 1.0

Mercury binding site 4 out of 4 in 5awg

Go back to Mercury Binding Sites List in 5awg
Mercury binding site 4 out of 4 in the Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Crystal Structure of Hg-Bound Sufb-Sufc-Sufd Complex From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Hg600

b:0.4
occ:0.94
SG F:CYS358 2.6 97.2 1.0
CD1 F:LEU349 2.6 0.6 1.0
N F:SER359 2.8 0.9 1.0
CG F:LEU349 3.1 0.7 1.0
CB F:CYS358 3.1 96.6 1.0
C F:CYS358 3.1 0.9 1.0
CD2 F:LEU349 3.2 0.5 1.0
CA F:SER359 3.3 0.7 1.0
C F:SER359 3.4 0.9 1.0
CA F:CYS358 3.6 0.8 1.0
O F:SER359 3.6 0.9 1.0
O F:CYS358 3.6 0.6 1.0
O F:GLY328 3.9 89.8 1.0
N F:HIS360 4.0 0.3 1.0
CB F:HIS360 4.2 0.7 1.0
CD1 F:ILE317 4.5 87.9 1.0
CB F:LEU349 4.6 0.4 1.0
CG F:HIS360 4.6 0.7 1.0
CA F:HIS360 4.8 97.6 1.0
CB F:SER359 4.8 86.7 1.0
N F:CYS358 4.9 0.7 1.0
C F:GLY328 4.9 91.5 1.0

Reference:

K.Hirabayashi, E.Yuda, N.Tanaka, S.Katayama, K.Iwasaki, T.Matsumoto, G.Kurisu, F.W.Outten, K.Fukuyama, Y.Takahashi, K.Wada. Functional Dynamics Revealed By the Structure of the Sufbcd Complex, A Novel Atp-Binding Cassette (Abc) Protein That Serves As A Scaffold For Iron-Sulfur Cluster Biogenesis J.Biol.Chem. V. 290 29717 2015.
ISSN: ESSN 1083-351X
PubMed: 26472926
DOI: 10.1074/JBC.M115.680934
Page generated: Sun Dec 13 19:12:16 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy