Mercury in PDB 5c9l: Crystal Structure of Native Pll Lectin From Photorhabdus Luminescens at 1.65 A Resolution

The structure of Crystal Structure of Native Pll Lectin From Photorhabdus Luminescens at 1.65 A Resolution, PDB code: 5c9l was solved by A.Kumar, P.Sykorova, G.Demo, P.Dobes, P.Hyrsl, M.Wimmerova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.15 / 1.65
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	71.120, 87.677, 157.691, 90.00, 90.00, 90.00
R / Rfree (%)	14.1 / 15.9

The structure of Crystal Structure of Native Pll Lectin From Photorhabdus Luminescens at 1.65 A Resolution also contains other interesting chemical elements:

Chlorine	(Cl)	1 atom
Calcium	(Ca)	2 atoms

The binding sites of Mercury atom in the Crystal Structure of Native Pll Lectin From Photorhabdus Luminescens at 1.65 A Resolution (pdb code 5c9l). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Crystal Structure of Native Pll Lectin From Photorhabdus Luminescens at 1.65 A Resolution, PDB code: 5c9l:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in the Crystal Structure of Native Pll Lectin From Photorhabdus Luminescens at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Native Pll Lectin From Photorhabdus Luminescens at 1.65 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg401 b:17.5 occ:0.30 CL A:CL405 2.0 22.9 0.8 SG A:CYS128 2.4 22.7 1.0 O A:ALA175 2.9 12.2 1.0 O A:HOH772 3.1 11.1 1.0 CB A:CYS128 3.3 14.4 1.0 CA A:CYS128 3.6 9.8 1.0 C A:ALA175 3.7 9.1 1.0 CA A:HIS176 3.7 8.1 1.0 O A:HOH642 3.8 19.1 1.0 N A:HIS176 4.0 8.9 1.0 O A:VAL127 4.2 10.4 1.0 N A:LEU129 4.4 9.4 1.0 C A:HIS176 4.5 9.4 1.0 N A:LEU177 4.5 9.3 1.0 C A:CYS128 4.6 10.8 1.0 ND1 A:HIS176 4.6 19.5 1.0 CE1 A:HIS80 4.6 10.1 1.0 CB A:ALA175 4.7 11.2 1.0 N A:CYS128 4.7 8.2 1.0 O A:HOH645 4.7 24.0 1.0 CB A:HIS176 4.7 10.4 1.0 CG A:HIS176 4.8 12.1 1.0 CA A:ALA175 4.8 9.8 1.0 C A:VAL127 4.9 8.4 1.0

Mercury binding site 2 out of 2 in the Crystal Structure of Native Pll Lectin From Photorhabdus Luminescens at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of Native Pll Lectin From Photorhabdus Luminescens at 1.65 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg402 b:44.0 occ:0.25 O A:HOH862 2.6 24.7 0.5 CD2 A:HIS298 3.1 64.5 1.0 CB A:HIS298 3.5 46.3 1.0 CG A:HIS298 3.6 58.6 1.0 O A:HIS298 3.9 35.5 1.0 NE2 A:HIS298 4.3 69.1 1.0 C A:HIS298 4.5 33.5 1.0 CA A:HIS298 4.6 39.2 1.0 ND1 A:HIS298 4.8 66.0 1.0

A.Kumar, P.Sykorova, G.Demo, P.Dobes, P.Hyrsl, M.Wimmerova. A Novel Fucose-Binding Lectin From Photorhabdus Luminescens (Pll) with An Unusual Heptabladed Beta-Propeller Tetrameric Structure. J.Biol.Chem. V. 291 25032 2016.
ISSN: ESSN 1083-351X
PubMed: 27758853
DOI: 10.1074/JBC.M115.693473