Mercury in PDB 5cql: Gtb Mutant with Mercury - E303A
Enzymatic activity of Gtb Mutant with Mercury - E303A
All present enzymatic activity of Gtb Mutant with Mercury - E303A:
2.4.1.37;
2.4.1.40;
Protein crystallography data
The structure of Gtb Mutant with Mercury - E303A, PDB code: 5cql
was solved by
S.M.L.Gagnon,
R.J.Blackler,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
75.11 /
1.69
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
52.490,
150.210,
79.230,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.4 /
20.7
|
Mercury Binding Sites:
The binding sites of Mercury atom in the Gtb Mutant with Mercury - E303A
(pdb code 5cql). This binding sites where shown within
5.0 Angstroms radius around Mercury atom.
In total 5 binding sites of Mercury where determined in the
Gtb Mutant with Mercury - E303A, PDB code: 5cql:
Jump to Mercury binding site number:
1;
2;
3;
4;
5;
Mercury binding site 1 out
of 5 in 5cql
Go back to
Mercury Binding Sites List in 5cql
Mercury binding site 1 out
of 5 in the Gtb Mutant with Mercury - E303A
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 1 of Gtb Mutant with Mercury - E303A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Hg401
b:78.2
occ:0.40
|
O
|
X:HOH615
|
2.6
|
54.6
|
1.0
|
O
|
X:GLY98
|
2.9
|
31.4
|
1.0
|
CB
|
X:CYS80
|
3.0
|
61.8
|
1.0
|
O
|
X:HOH530
|
3.4
|
38.9
|
1.0
|
N
|
X:CYS80
|
3.5
|
56.5
|
1.0
|
CA
|
X:CYS80
|
3.8
|
57.6
|
1.0
|
C
|
X:GLY98
|
4.1
|
30.5
|
1.0
|
SG
|
X:CYS80
|
4.4
|
75.8
|
1.0
|
CA
|
X:THR99
|
4.5
|
23.2
|
1.0
|
O
|
X:HOH559
|
4.6
|
49.6
|
1.0
|
C
|
X:PRO79
|
4.6
|
41.7
|
1.0
|
N
|
X:ARG81
|
4.7
|
39.3
|
1.0
|
C
|
X:CYS80
|
4.7
|
49.1
|
1.0
|
N
|
X:THR99
|
4.8
|
24.5
|
1.0
|
C
|
X:THR99
|
4.9
|
23.6
|
1.0
|
O
|
X:HOH617
|
5.0
|
58.2
|
1.0
|
|
Mercury binding site 2 out
of 5 in 5cql
Go back to
Mercury Binding Sites List in 5cql
Mercury binding site 2 out
of 5 in the Gtb Mutant with Mercury - E303A
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 2 of Gtb Mutant with Mercury - E303A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Hg402
b:39.3
occ:0.40
|
SG
|
X:CYS209
|
2.1
|
26.8
|
0.5
|
OG1
|
X:THR119
|
2.7
|
27.2
|
1.0
|
CB
|
X:CYS209
|
3.1
|
24.3
|
0.5
|
CB
|
X:CYS209
|
3.2
|
23.9
|
0.5
|
HG
|
X:HG403
|
3.8
|
31.1
|
0.3
|
SG
|
X:CYS209
|
3.8
|
28.4
|
0.5
|
CB
|
X:THR119
|
3.8
|
24.4
|
1.0
|
CG2
|
X:THR119
|
4.0
|
24.1
|
1.0
|
CA
|
X:CYS209
|
4.0
|
22.3
|
0.5
|
CA
|
X:CYS209
|
4.1
|
21.8
|
0.5
|
CG1
|
X:VAL277
|
4.5
|
24.1
|
1.0
|
N
|
X:CYS209
|
4.5
|
21.3
|
0.5
|
N
|
X:CYS209
|
4.6
|
21.1
|
0.5
|
C
|
X:VAL208
|
4.9
|
21.6
|
1.0
|
O
|
X:VAL208
|
4.9
|
22.5
|
1.0
|
CD1
|
X:LEU207
|
5.0
|
27.9
|
1.0
|
|
Mercury binding site 3 out
of 5 in 5cql
Go back to
Mercury Binding Sites List in 5cql
Mercury binding site 3 out
of 5 in the Gtb Mutant with Mercury - E303A
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 3 of Gtb Mutant with Mercury - E303A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Hg403
b:31.1
occ:0.35
|
SG
|
X:CYS209
|
2.3
|
28.4
|
0.5
|
O
|
X:HOH620
|
2.7
|
24.7
|
1.0
|
OG1
|
X:THR119
|
3.1
|
27.2
|
1.0
|
CB
|
X:CYS209
|
3.4
|
24.3
|
0.5
|
O
|
X:THR119
|
3.5
|
24.2
|
1.0
|
CE1
|
X:PHE121
|
3.6
|
58.3
|
1.0
|
CD1
|
X:PHE121
|
3.6
|
55.3
|
1.0
|
CB
|
X:CYS209
|
3.7
|
23.9
|
0.5
|
HG
|
X:HG402
|
3.8
|
39.3
|
0.4
|
C
|
X:THR119
|
3.8
|
24.1
|
1.0
|
CA
|
X:CYS209
|
3.9
|
22.3
|
0.5
|
CB
|
X:THR119
|
3.9
|
24.4
|
1.0
|
CA
|
X:CYS209
|
3.9
|
21.8
|
0.5
|
O
|
X:HOH533
|
4.2
|
30.6
|
1.0
|
O
|
X:VAL210
|
4.3
|
21.8
|
1.0
|
N
|
X:VAL210
|
4.3
|
21.6
|
1.0
|
N
|
X:VAL120
|
4.3
|
22.5
|
1.0
|
C
|
X:CYS209
|
4.4
|
23.0
|
0.5
|
C
|
X:CYS209
|
4.4
|
22.8
|
0.5
|
CA
|
X:VAL120
|
4.4
|
24.1
|
1.0
|
SG
|
X:CYS209
|
4.5
|
26.8
|
0.5
|
CA
|
X:THR119
|
4.5
|
22.3
|
1.0
|
N
|
X:PHE121
|
4.8
|
28.2
|
1.0
|
C
|
X:VAL120
|
4.8
|
28.2
|
1.0
|
CZ
|
X:PHE121
|
4.9
|
56.7
|
1.0
|
CG
|
X:PHE121
|
4.9
|
45.3
|
1.0
|
|
Mercury binding site 4 out
of 5 in 5cql
Go back to
Mercury Binding Sites List in 5cql
Mercury binding site 4 out
of 5 in the Gtb Mutant with Mercury - E303A
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 4 of Gtb Mutant with Mercury - E303A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Hg404
b:43.4
occ:0.35
|
SG
|
X:CYS284
|
2.3
|
34.9
|
1.0
|
CB
|
X:CYS284
|
3.0
|
32.8
|
1.0
|
CD2
|
X:LEU280
|
3.7
|
31.6
|
1.0
|
N
|
X:LEU306
|
3.8
|
25.8
|
1.0
|
CA
|
X:LEU306
|
3.9
|
25.2
|
1.0
|
O
|
X:ASP302
|
4.1
|
36.5
|
1.0
|
CB
|
X:LEU306
|
4.1
|
25.2
|
1.0
|
C
|
X:HIS305
|
4.4
|
26.3
|
1.0
|
CB
|
X:HIS305
|
4.4
|
29.2
|
1.0
|
CA
|
X:CYS284
|
4.4
|
28.5
|
1.0
|
CD1
|
X:LEU306
|
4.5
|
26.3
|
1.0
|
HG
|
X:HG405
|
4.7
|
27.2
|
0.3
|
O
|
X:LEU280
|
4.8
|
25.4
|
1.0
|
CG
|
X:LEU280
|
4.8
|
28.4
|
1.0
|
O
|
X:HIS305
|
4.9
|
23.9
|
1.0
|
CG
|
X:LEU306
|
4.9
|
25.9
|
1.0
|
CE
|
X:MET288
|
4.9
|
44.4
|
1.0
|
C
|
X:ASP302
|
5.0
|
50.2
|
1.0
|
|
Mercury binding site 5 out
of 5 in 5cql
Go back to
Mercury Binding Sites List in 5cql
Mercury binding site 5 out
of 5 in the Gtb Mutant with Mercury - E303A
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 5 of Gtb Mutant with Mercury - E303A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Hg405
b:27.2
occ:0.30
|
O
|
X:HOH623
|
2.4
|
37.0
|
1.0
|
SG
|
X:CYS284
|
2.6
|
34.9
|
1.0
|
O
|
X:HIS305
|
3.1
|
23.9
|
1.0
|
O
|
X:HOH601
|
3.1
|
41.0
|
1.0
|
CA
|
X:CYS284
|
3.4
|
28.5
|
1.0
|
N
|
X:CYS284
|
3.5
|
27.6
|
1.0
|
CB
|
X:TYR309
|
3.6
|
24.7
|
1.0
|
CB
|
X:CYS284
|
3.6
|
32.8
|
1.0
|
C
|
X:HIS305
|
3.7
|
26.3
|
1.0
|
C
|
X:ALA283
|
3.9
|
29.8
|
1.0
|
CB
|
X:HIS305
|
4.0
|
29.2
|
1.0
|
CD1
|
X:TYR309
|
4.0
|
25.9
|
1.0
|
O
|
X:ALA283
|
4.1
|
31.3
|
1.0
|
CG
|
X:TYR309
|
4.2
|
25.0
|
1.0
|
CA
|
X:HIS305
|
4.2
|
27.7
|
1.0
|
N
|
X:TYR309
|
4.3
|
23.8
|
1.0
|
CA
|
X:TYR309
|
4.3
|
25.1
|
1.0
|
CB
|
X:ALA283
|
4.3
|
29.0
|
1.0
|
O
|
X:LEU280
|
4.6
|
25.4
|
1.0
|
N
|
X:LEU306
|
4.6
|
25.8
|
1.0
|
C
|
X:CYS284
|
4.7
|
29.1
|
1.0
|
HG
|
X:HG404
|
4.7
|
43.4
|
0.3
|
CA
|
X:ALA283
|
4.8
|
31.0
|
1.0
|
ND1
|
X:HIS305
|
4.8
|
36.2
|
1.0
|
CG
|
X:HIS305
|
4.9
|
34.3
|
1.0
|
CB
|
X:ALA287
|
4.9
|
31.8
|
1.0
|
|
Reference:
R.J.Blackler,
S.M.Gagnon,
R.Polakowski,
N.L.Rose,
R.B.Zheng,
J.A.Letts,
A.R.Johal,
B.Schuman,
S.N.Borisova,
M.M.Palcic,
S.V.Evans.
Glycosyltransfer in Mutants of Putative Catalytic Residue GLU303 of the Human Abo(H) A and B Blood Group Glycosyltransferases Gta and Gtb Proceeds Through A Labile Active Site. Glycobiology V. 27 370 2017.
ISSN: ESSN 1460-2423
PubMed: 27979997
DOI: 10.1093/GLYCOB/CWW117
Page generated: Sun Aug 11 06:12:12 2024
|