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Mercury in PDB 5d1f: Crystal Structure of Maize Pdrp Bound with Amp and HG2+

Enzymatic activity of Crystal Structure of Maize Pdrp Bound with Amp and HG2+

All present enzymatic activity of Crystal Structure of Maize Pdrp Bound with Amp and HG2+:
2.7.11.32; 2.7.4.27;

Protein crystallography data

The structure of Crystal Structure of Maize Pdrp Bound with Amp and HG2+, PDB code: 5d1f was solved by L.Jiang, Z.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.68 / 3.40
Space group P 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 175.514, 175.514, 175.514, 90.00, 90.00, 90.00
R / Rfree (%) 22.3 / 24.3

Other elements in 5d1f:

The structure of Crystal Structure of Maize Pdrp Bound with Amp and HG2+ also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Maize Pdrp Bound with Amp and HG2+ (pdb code 5d1f). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the Crystal Structure of Maize Pdrp Bound with Amp and HG2+, PDB code: 5d1f:

Mercury binding site 1 out of 1 in 5d1f

Go back to Mercury Binding Sites List in 5d1f
Mercury binding site 1 out of 1 in the Crystal Structure of Maize Pdrp Bound with Amp and HG2+


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Maize Pdrp Bound with Amp and HG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg502

b:0.8
occ:0.60
SG A:CYS225 3.0 55.0 1.0
CB A:CYS218 3.3 65.4 1.0
O A:VAL223 3.3 64.9 1.0
N A:CYS225 3.7 54.1 1.0
CB A:CYS225 3.7 54.4 1.0
O A:LYS215 3.8 61.8 1.0
C A:PRO224 4.1 53.8 1.0
CA A:LYS215 4.1 59.1 1.0
CA A:CYS225 4.3 55.4 1.0
CB A:LYS215 4.3 59.9 1.0
SG A:CYS218 4.3 67.2 1.0
N A:ASP219 4.3 68.1 1.0
CA A:PRO224 4.4 55.9 1.0
C A:LYS215 4.4 59.6 1.0
C A:CYS218 4.5 63.8 1.0
C A:VAL223 4.5 62.5 1.0
CA A:CYS218 4.5 61.4 1.0
O A:PRO224 4.8 53.4 1.0
C A:CYS225 4.9 55.9 1.0
CA A:ASP219 4.9 70.7 1.0
O A:CYS225 4.9 63.2 1.0
N A:PRO224 5.0 58.7 1.0

Reference:

L.Jiang, Y.B.Chen, J.Zheng, Z.Chen, Y.Liu, Y.Tao, W.Wu, Z.Chen, B.C.Wang. Structural Basis of Reversible Phosphorylation By Maize Pyruvate Orthophosphate Dikinase Regulatory Protein Plant Physiol. V. 170 732 2016.
ISSN: ESSN 1532-2548
PubMed: 26620526
DOI: 10.1104/PP.15.01709
Page generated: Sun Dec 13 19:12:27 2020

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