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Mercury in PDB 5fio: Darpins As A New Tool For Experimental Phasing in Protein Crystallography

Protein crystallography data

The structure of Darpins As A New Tool For Experimental Phasing in Protein Crystallography, PDB code: 5fio was solved by A.Batyuk, A.Honegger, F.Andres, C.Briand, M.Gruetter, A.Plueckthun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.18 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 72.610, 43.790, 82.420, 90.00, 108.28, 90.00
R / Rfree (%) 20.9 / 25.3

Mercury Binding Sites:

The binding sites of Mercury atom in the Darpins As A New Tool For Experimental Phasing in Protein Crystallography (pdb code 5fio). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the Darpins As A New Tool For Experimental Phasing in Protein Crystallography, PDB code: 5fio:

Mercury binding site 1 out of 1 in 5fio

Go back to Mercury Binding Sites List in 5fio
Mercury binding site 1 out of 1 in the Darpins As A New Tool For Experimental Phasing in Protein Crystallography


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Darpins As A New Tool For Experimental Phasing in Protein Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1171

b:43.4
occ:0.63
SG A:CYS30 2.5 40.0 1.0
SG A:CYS65 2.5 49.0 1.0
O A:HOH2008 2.8 21.6 1.0
HB3 A:CYS65 2.8 56.3 1.0
SD A:MET34 2.9 34.4 0.3
HB3 A:CYS30 3.1 40.2 1.0
CB A:CYS65 3.2 46.9 1.0
HG13 A:ILE62 3.4 43.6 0.4
CB A:CYS30 3.4 33.5 1.0
HG3 A:MET34 3.5 37.6 0.7
HD21 A:LEU66 3.5 41.4 1.0
HB2 A:CYS65 3.7 56.3 1.0
HG21 A:ILE62 3.8 43.5 0.6
C A:CYS30 3.9 24.5 1.0
HG3 A:MET34 3.9 37.7 0.3
HG2 A:MET34 3.9 37.6 0.7
HA A:ILE62 3.9 47.3 0.4
HA A:ARG31 3.9 28.5 1.0
HD22 A:LEU66 3.9 41.4 1.0
O A:CYS30 4.0 22.4 1.0
HG A:LEU66 4.0 39.0 1.0
HE2 A:MET34 4.1 40.2 0.3
CE A:MET34 4.1 33.5 0.3
N A:ARG31 4.1 23.6 1.0
CG A:MET34 4.1 31.4 0.3
CD2 A:LEU66 4.1 34.5 1.0
HB2 A:CYS30 4.2 40.2 1.0
CG A:MET34 4.2 31.4 0.7
CA A:CYS30 4.3 27.2 1.0
HE1 A:MET34 4.3 40.2 0.3
C A:CYS65 4.3 44.9 1.0
N A:LEU66 4.4 38.3 1.0
O A:ILE62 4.4 37.6 1.0
H A:LEU66 4.4 45.9 1.0
H A:ARG31 4.4 28.4 1.0
CG1 A:ILE62 4.4 36.3 0.4
CA A:CYS65 4.4 46.5 1.0
HD1 A:HIS69 4.5 60.7 1.0
CA A:ARG31 4.5 23.7 1.0
HA A:LEU66 4.6 43.9 1.0
CG A:LEU66 4.6 32.5 1.0
HG12 A:ILE62 4.6 46.5 0.6
HG12 A:ILE62 4.7 43.6 0.4
HD12 A:LEU18 4.7 31.4 1.0
CG2 A:ILE62 4.7 36.2 0.6
HB2 A:MET34 4.7 36.4 0.7
HB2 A:MET34 4.7 36.4 0.3
HA A:CYS30 4.7 32.6 1.0
CA A:ILE62 4.8 39.4 0.4
O A:CYS65 4.8 45.1 1.0
CA A:ILE62 4.8 39.4 0.6
HG2 A:MET34 4.8 37.7 0.3
HE1 A:HIS69 4.8 65.5 1.0
HB2 A:ARG31 4.9 29.6 1.0
O A:ASP27 4.9 49.4 1.0
HG23 A:ILE62 4.9 43.5 0.6
HE3 A:MET34 4.9 40.2 0.3
HA A:CYS65 5.0 55.9 1.0
HD12 A:ILE62 5.0 41.9 0.4
CA A:LEU66 5.0 36.5 1.0
HD23 A:LEU66 5.0 41.4 1.0

Reference:

A.Batyuk, A.Honegger, F.Andres, C.Briand, M.Gruetter, A.Plueckthun. Darpins As A New Tool For Experimental Phasing in Protein Crystallography To Be Published.
Page generated: Sun Dec 13 19:12:37 2020

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