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Mercury in PDB 5jkn: Crystal Structure of Deubiquitinase Mindy-1

Protein crystallography data

The structure of Crystal Structure of Deubiquitinase Mindy-1, PDB code: 5jkn was solved by S.A.Abdul Rehman, Y.Kulathu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 99.67 / 3.00
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 99.671, 99.671, 165.123, 90.00, 90.00, 90.00
R / Rfree (%) 19.7 / 24.2

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Deubiquitinase Mindy-1 (pdb code 5jkn). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the Crystal Structure of Deubiquitinase Mindy-1, PDB code: 5jkn:

Mercury binding site 1 out of 1 in 5jkn

Go back to Mercury Binding Sites List in 5jkn
Mercury binding site 1 out of 1 in the Crystal Structure of Deubiquitinase Mindy-1


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Deubiquitinase Mindy-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg403

b:0.5
occ:0.30
SG A:CYS226 2.6 0.1 1.0
CD2 A:LEU236 3.8 0.3 1.0
CB A:CYS226 3.9 0.1 1.0
N A:CYS226 3.9 0.4 1.0
CA A:CYS226 4.0 0.5 1.0
OG1 A:THR223 4.2 0.9 1.0
C A:GLU225 4.5 0.7 1.0
CE2 A:PHE229 4.6 0.1 1.0
CG1 A:VAL210 4.6 0.7 1.0
CD2 A:PHE229 4.8 98.8 1.0
CB A:GLU225 4.8 0.7 1.0
CD2 A:LEU208 4.8 0.1 1.0
O A:GLU225 4.9 0.7 1.0

Reference:

S.A.Abdul Rehman, Y.A.Kristariyanto, S.Y.Choi, P.J.Nkosi, S.Weidlich, K.Labib, K.Hofmann, Y.Kulathu. Mindy-1 Is A Member of An Evolutionarily Conserved and Structurally Distinct New Family of Deubiquitinating Enzymes. Mol.Cell V. 63 146 2016.
ISSN: ISSN 1097-2765
PubMed: 27292798
DOI: 10.1016/J.MOLCEL.2016.05.009
Page generated: Sun Dec 13 19:12:47 2020

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