Atomistry » Mercury » PDB 5lf8-6bvg » 5lf8
Atomistry »
  Mercury »
    PDB 5lf8-6bvg »
      5lf8 »

Mercury in PDB 5lf8: Human Nucleoside Diphosphate-Linked Moiety X Motif 17 (NUDT17)

Protein crystallography data

The structure of Human Nucleoside Diphosphate-Linked Moiety X Motif 17 (NUDT17), PDB code: 5lf8 was solved by S.Mathea, C.Tallant, E.Salah, D.Wang, S.Velupillai, R.Nowak, S.Oerum, T.Krojer, N.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, K.Huber, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 75.96 / 2.56
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 151.913, 151.913, 81.495, 90.00, 90.00, 120.00
R / Rfree (%) 22.7 / 29.8

Mercury Binding Sites:

The binding sites of Mercury atom in the Human Nucleoside Diphosphate-Linked Moiety X Motif 17 (NUDT17) (pdb code 5lf8). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Human Nucleoside Diphosphate-Linked Moiety X Motif 17 (NUDT17), PDB code: 5lf8:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in 5lf8

Go back to Mercury Binding Sites List in 5lf8
Mercury binding site 1 out of 2 in the Human Nucleoside Diphosphate-Linked Moiety X Motif 17 (NUDT17)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Human Nucleoside Diphosphate-Linked Moiety X Motif 17 (NUDT17) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg402

b:75.8
occ:1.00
HG A:EMC402 0.0 75.8 1.0
C1 A:EMC402 2.3 78.7 1.0
SG A:CYS40 2.7 75.7 1.0
C2 A:EMC402 3.1 77.5 1.0
CB A:CYS40 3.5 60.0 1.0
C A:CYS40 3.5 51.5 1.0
O A:CYS40 3.6 43.8 1.0
N A:SER41 3.8 50.6 1.0
N A:LEU42 4.0 82.9 1.0
CA A:SER41 4.1 54.7 1.0
C A:SER41 4.1 64.8 1.0
CD1 A:LEU184 4.1 72.7 1.0
CA A:CYS40 4.1 52.8 1.0
CD1 A:LEU47 4.1 62.8 1.0
OG A:SER58 4.4 62.3 1.0
CB A:ALA59 4.5 72.5 1.0
O A:SER41 4.6 61.8 1.0
CD1 A:LEU61 4.6 50.6 1.0
CB A:LEU42 4.6 84.6 1.0
N A:CYS40 4.9 56.8 1.0
CA A:LEU42 4.9 84.1 1.0

Mercury binding site 2 out of 2 in 5lf8

Go back to Mercury Binding Sites List in 5lf8
Mercury binding site 2 out of 2 in the Human Nucleoside Diphosphate-Linked Moiety X Motif 17 (NUDT17)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Human Nucleoside Diphosphate-Linked Moiety X Motif 17 (NUDT17) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg403

b:0.4
occ:1.00
HG A:EMC403 0.0 0.4 1.0
C1 A:EMC403 2.4 0.0 1.0
SG A:CYS24 2.8 78.8 1.0
C2 A:EMC403 3.2 0.7 1.0
CB A:CYS24 3.5 72.1 1.0
O A:CYS24 3.5 69.0 1.0
C A:CYS24 3.6 68.8 1.0
CG2 A:THR35 3.6 77.5 1.0
N A:GLY34 3.8 82.0 1.0
C A:GLY34 3.8 94.5 1.0
O A:GLY34 3.9 92.5 1.0
CB A:THR35 3.9 87.3 1.0
CA A:CYS24 4.0 69.5 1.0
NH1 A:ARG65 4.0 0.8 1.0
CA A:GLY34 4.0 86.9 1.0
N A:THR35 4.2 98.0 1.0
N A:GLY25 4.2 68.0 1.0
C A:LEU33 4.5 84.0 1.0
N A:LEU33 4.5 70.5 1.0
CA A:THR35 4.7 92.2 1.0
CA A:GLY25 4.7 66.5 1.0
CA A:GLY28 4.7 89.3 1.0
N A:GLY28 4.9 91.8 1.0
CA A:LEU33 5.0 87.4 1.0

Reference:

K.Huber, S.Mathea, C.Tallant, E.Salah, D.Wang, S.Velupillai, R.Nowak, S.Oerum, T.Krojer, N.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, K.Huber, Structural Genomics Consortium (Sgc). N/A N/A.
Page generated: Sun Dec 13 19:12:59 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy