Mercury in PDB 5lf8: Human Nucleoside Diphosphate-Linked Moiety X Motif 17 (NUDT17)

The structure of Human Nucleoside Diphosphate-Linked Moiety X Motif 17 (NUDT17), PDB code: 5lf8 was solved by S.Mathea, C.Tallant, E.Salah, D.Wang, S.Velupillai, R.Nowak, S.Oerum, T.Krojer, N.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, K.Huber, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	75.96 / 2.56
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	151.913, 151.913, 81.495, 90.00, 90.00, 120.00
R / Rfree (%)	22.7 / 29.8

The binding sites of Mercury atom in the Human Nucleoside Diphosphate-Linked Moiety X Motif 17 (NUDT17) (pdb code 5lf8). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Human Nucleoside Diphosphate-Linked Moiety X Motif 17 (NUDT17), PDB code: 5lf8:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in the Human Nucleoside Diphosphate-Linked Moiety X Motif 17 (NUDT17)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Human Nucleoside Diphosphate-Linked Moiety X Motif 17 (NUDT17) within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg402 b:75.8 occ:1.00 HG A:EMC402 0.0 75.8 1.0 C1 A:EMC402 2.3 78.7 1.0 SG A:CYS40 2.7 75.7 1.0 C2 A:EMC402 3.1 77.5 1.0 CB A:CYS40 3.5 60.0 1.0 C A:CYS40 3.5 51.5 1.0 O A:CYS40 3.6 43.8 1.0 N A:SER41 3.8 50.6 1.0 N A:LEU42 4.0 82.9 1.0 CA A:SER41 4.1 54.7 1.0 C A:SER41 4.1 64.8 1.0 CD1 A:LEU184 4.1 72.7 1.0 CA A:CYS40 4.1 52.8 1.0 CD1 A:LEU47 4.1 62.8 1.0 OG A:SER58 4.4 62.3 1.0 CB A:ALA59 4.5 72.5 1.0 O A:SER41 4.6 61.8 1.0 CD1 A:LEU61 4.6 50.6 1.0 CB A:LEU42 4.6 84.6 1.0 N A:CYS40 4.9 56.8 1.0 CA A:LEU42 4.9 84.1 1.0

Mercury binding site 2 out of 2 in the Human Nucleoside Diphosphate-Linked Moiety X Motif 17 (NUDT17)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Human Nucleoside Diphosphate-Linked Moiety X Motif 17 (NUDT17) within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg403 b:0.4 occ:1.00 HG A:EMC403 0.0 0.4 1.0 C1 A:EMC403 2.4 0.0 1.0 SG A:CYS24 2.8 78.8 1.0 C2 A:EMC403 3.2 0.7 1.0 CB A:CYS24 3.5 72.1 1.0 O A:CYS24 3.5 69.0 1.0 C A:CYS24 3.6 68.8 1.0 CG2 A:THR35 3.6 77.5 1.0 N A:GLY34 3.8 82.0 1.0 C A:GLY34 3.8 94.5 1.0 O A:GLY34 3.9 92.5 1.0 CB A:THR35 3.9 87.3 1.0 CA A:CYS24 4.0 69.5 1.0 NH1 A:ARG65 4.0 0.8 1.0 CA A:GLY34 4.0 86.9 1.0 N A:THR35 4.2 98.0 1.0 N A:GLY25 4.2 68.0 1.0 C A:LEU33 4.5 84.0 1.0 N A:LEU33 4.5 70.5 1.0 CA A:THR35 4.7 92.2 1.0 CA A:GLY25 4.7 66.5 1.0 CA A:GLY28 4.7 89.3 1.0 N A:GLY28 4.9 91.8 1.0 CA A:LEU33 5.0 87.4 1.0

K.Huber, S.Mathea, C.Tallant, E.Salah, D.Wang, S.Velupillai, R.Nowak, S.Oerum, T.Krojer, N.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, K.Huber, Structural Genomics Consortium (Sgc). N/A N/A.