Mercury in PDB 5mlf: Structure of PSB29 at 1.55A

The structure of Structure of PSB29 at 1.55A, PDB code: 5mlf was solved by J.W.Murray, A.Kozlo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.98 / 3.64
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	138.910, 138.910, 305.910, 90.00, 90.00, 120.00
R / Rfree (%)	31.1 / 35.8

The binding sites of Mercury atom in the Structure of PSB29 at 1.55A (pdb code 5mlf). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 7 binding sites of Mercury where determined in the Structure of PSB29 at 1.55A, PDB code: 5mlf:
Jump to Mercury binding site number: 1; 2; 3; 4; 5; 6; 7;

Mercury binding site 1 out of 7 in the Structure of PSB29 at 1.55A


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Structure of PSB29 at 1.55A within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg301 b:96.7 occ:1.00 SG A:CYS81 2.8 0.8 1.0 CE A:MET86 3.5 88.5 1.0 N A:CYS81 3.6 0.7 1.0 CA A:CYS81 3.7 0.1 1.0 O A:PHE77 3.8 0.9 1.0 CB A:CYS81 3.9 0.7 1.0 C A:LEU80 4.0 0.3 1.0 CB A:LEU80 4.0 0.7 1.0 CE1 A:PHE77 4.1 0.2 1.0 CD1 A:PHE77 4.2 0.3 1.0 CG1 A:VAL56 4.4 44.6 1.0 CD2 A:LEU80 4.5 81.9 1.0 O A:LEU80 4.5 1.0 1.0 CZ A:PHE77 4.5 0.2 1.0 CG A:PHE77 4.6 0.4 1.0 CA A:LEU80 4.6 1.0 1.0 CD1 A:LEU91 4.7 87.3 1.0 C A:PHE77 4.7 0.1 1.0 CA A:PHE77 4.7 0.4 1.0 CG A:LEU80 4.7 0.3 1.0 CE2 A:PHE77 4.9 0.9 1.0 CD2 A:PHE77 4.9 0.7 1.0

Mercury binding site 2 out of 7 in the Structure of PSB29 at 1.55A


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Structure of PSB29 at 1.55A within 5.0Å range: probe atom residue distance (Å) B Occ B:Hg301 b:0.5 occ:1.00 SG B:CYS81 2.8 0.3 1.0 CE B:MET86 3.3 0.7 1.0 N B:CYS81 3.6 0.7 1.0 CA B:CYS81 3.7 0.2 1.0 CB B:CYS81 3.8 0.5 1.0 O B:PHE77 3.9 0.1 1.0 C B:LEU80 4.1 0.8 1.0 CE1 B:PHE77 4.2 70.2 1.0 CB B:LEU80 4.3 0.5 1.0 CD1 B:PHE77 4.3 74.1 1.0 CG1 B:VAL56 4.3 57.0 1.0 CD1 B:LEU91 4.5 77.4 1.0 O B:LEU80 4.5 0.0 1.0 CZ B:PHE77 4.5 70.0 1.0 CD2 B:LEU80 4.6 94.1 1.0 CG B:PHE77 4.7 80.5 1.0 CA B:LEU80 4.8 0.9 1.0 C B:PHE77 4.8 0.1 1.0 CA B:PHE77 4.9 0.4 1.0 CE2 B:PHE77 4.9 73.9 1.0 SD B:MET86 4.9 0.1 1.0 CG B:LEU80 4.9 98.7 1.0 CD2 B:PHE77 5.0 77.3 1.0 CD1 B:ILE37 5.0 68.4 1.0

Mercury binding site 3 out of 7 in the Structure of PSB29 at 1.55A


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Structure of PSB29 at 1.55A within 5.0Å range: probe atom residue distance (Å) B Occ C:Hg301 b:96.2 occ:1.00 SG C:CYS81 2.8 0.4 1.0 CE C:MET86 3.6 64.8 1.0 N C:CYS81 3.7 83.5 1.0 O C:PHE77 3.8 0.6 1.0 CA C:CYS81 3.8 87.1 1.0 CB C:CYS81 3.9 94.1 1.0 CE1 C:PHE77 4.0 0.4 1.0 CD1 C:PHE77 4.0 0.5 1.0 C C:LEU80 4.2 79.6 1.0 CB C:LEU80 4.2 73.2 1.0 CG1 C:VAL56 4.3 53.7 1.0 CZ C:PHE77 4.4 99.7 1.0 CG C:PHE77 4.4 0.4 1.0 CD1 C:LEU91 4.6 44.3 1.0 CA C:PHE77 4.6 0.1 1.0 CD2 C:LEU80 4.6 62.7 1.0 C C:PHE77 4.6 0.6 1.0 O C:LEU80 4.7 45.8 1.0 CE2 C:PHE77 4.8 0.2 1.0 CA C:LEU80 4.8 78.2 1.0 CD2 C:PHE77 4.8 0.7 1.0 CG C:LEU80 4.9 64.8 1.0

Mercury binding site 4 out of 7 in the Structure of PSB29 at 1.55A


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Structure of PSB29 at 1.55A within 5.0Å range: probe atom residue distance (Å) B Occ D:Hg301 b:0.1 occ:1.00 SG D:CYS81 2.8 0.1 1.0 O D:PHE77 3.6 0.4 1.0 N D:CYS81 3.7 0.3 1.0 CE D:MET86 3.8 91.1 1.0 CD1 D:PHE77 3.9 0.9 1.0 CA D:CYS81 3.9 0.0 1.0 CE1 D:PHE77 3.9 0.8 1.0 CB D:CYS81 4.0 0.5 1.0 CB D:LEU80 4.0 0.7 1.0 C D:LEU80 4.1 0.6 1.0 CG D:PHE77 4.3 0.4 1.0 CA D:PHE77 4.4 0.2 1.0 CZ D:PHE77 4.4 99.6 1.0 C D:PHE77 4.4 0.1 1.0 CG1 D:VAL56 4.5 27.0 1.0 CD2 D:LEU80 4.6 0.4 1.0 CA D:LEU80 4.6 0.6 1.0 CD2 D:PHE77 4.7 99.7 1.0 O D:LEU80 4.7 0.1 1.0 CE2 D:PHE77 4.7 99.1 1.0 CG D:LEU80 4.8 0.8 1.0 CD1 D:LEU91 4.9 96.9 1.0 CB D:PHE77 4.9 1.0 1.0

Mercury binding site 5 out of 7 in the Structure of PSB29 at 1.55A


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Structure of PSB29 at 1.55A within 5.0Å range: probe atom residue distance (Å) B Occ E:Hg301 b:94.8 occ:1.00 SG E:CYS81 2.8 0.1 1.0 O E:PHE77 3.7 80.0 1.0 N E:CYS81 3.7 0.5 1.0 CE E:MET86 3.8 92.1 1.0 CA E:CYS81 3.9 0.1 1.0 CD1 E:PHE77 3.9 65.4 1.0 CE1 E:PHE77 3.9 64.3 1.0 CB E:CYS81 4.0 0.6 1.0 CB E:LEU80 4.1 76.1 1.0 C E:LEU80 4.2 88.2 1.0 CG E:PHE77 4.3 67.9 1.0 CZ E:PHE77 4.3 64.3 1.0 CG1 E:VAL56 4.4 0.2 1.0 CA E:PHE77 4.4 74.8 1.0 C E:PHE77 4.5 79.9 1.0 CD2 E:LEU80 4.6 71.2 1.0 CD2 E:PHE77 4.6 67.9 1.0 CE2 E:PHE77 4.7 66.5 1.0 CA E:LEU80 4.7 77.9 1.0 O E:LEU80 4.7 86.8 1.0 CD1 E:LEU91 4.7 0.6 1.0 CG E:LEU80 4.9 73.7 1.0 CB E:PHE77 5.0 71.7 1.0

Mercury binding site 6 out of 7 in the Structure of PSB29 at 1.55A


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 6 of Structure of PSB29 at 1.55A within 5.0Å range: probe atom residue distance (Å) B Occ G:Hg301 b:0.5 occ:1.00 SG G:CYS81 2.8 0.3 1.0 CE G:MET86 3.6 74.4 1.0 N G:CYS81 3.7 0.0 1.0 O G:PHE77 3.7 0.9 1.0 CA G:CYS81 3.8 0.2 1.0 CB G:CYS81 3.9 0.0 1.0 CE1 G:PHE77 4.0 0.2 1.0 CD1 G:PHE77 4.1 0.4 1.0 C G:LEU80 4.1 0.7 1.0 CB G:LEU80 4.1 0.2 1.0 CG1 G:VAL56 4.4 68.3 1.0 CZ G:PHE77 4.4 1.0 1.0 CG G:PHE77 4.4 0.5 1.0 CD2 G:LEU80 4.6 0.0 1.0 CA G:PHE77 4.6 0.2 1.0 C G:PHE77 4.6 0.1 1.0 O G:LEU80 4.6 0.4 1.0 CD1 G:LEU91 4.7 0.9 1.0 CA G:LEU80 4.7 0.4 1.0 CE2 G:PHE77 4.7 0.2 1.0 CD2 G:PHE77 4.8 0.3 1.0 CG G:LEU80 4.9 1.0 1.0

Mercury binding site 7 out of 7 in the Structure of PSB29 at 1.55A


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 7 of Structure of PSB29 at 1.55A within 5.0Å range: probe atom residue distance (Å) B Occ F:Hg301 b:94.6 occ:1.00 SG F:CYS81 2.8 75.5 1.0 CE F:MET86 3.5 66.6 1.0 N F:CYS81 3.7 0.4 1.0 CA F:CYS81 3.8 0.5 1.0 O F:PHE77 3.8 0.8 1.0 CB F:CYS81 3.9 0.4 1.0 CE1 F:PHE77 4.0 0.7 1.0 CD1 F:PHE77 4.1 0.8 1.0 C F:LEU80 4.1 76.0 1.0 CB F:LEU80 4.2 84.3 1.0 CG1 F:VAL56 4.3 36.3 1.0 CZ F:PHE77 4.4 0.6 1.0 CG F:PHE77 4.5 0.6 1.0 CD1 F:LEU91 4.5 66.4 1.0 O F:LEU80 4.6 75.9 1.0 CD2 F:LEU80 4.6 76.5 1.0 C F:PHE77 4.7 0.3 1.0 CA F:PHE77 4.7 0.9 1.0 CE2 F:PHE77 4.8 0.6 1.0 CA F:LEU80 4.8 76.3 1.0 CD2 F:PHE77 4.8 0.6 1.0 CG F:LEU80 4.9 84.1 1.0

M.Bec Kova, J.Yu, V.Krynicka, A.Kozlo, S.Shao, P.Konik, J.Komenda, J.W.Murray, P.J.Nixon. Structure of PSB29/THF1 and Its Association with the Ftsh Protease Complex Involved in Photosystem II Repair in Cyanobacteria. Philos. Trans. R. Soc. V. 372 2017LOND., B, Biol. Sci..
ISSN: ESSN 1471-2970
PubMed: 28808107
DOI: 10.1098/RSTB.2016.0394