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Mercury in PDB 5sv1: Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5

Protein crystallography data

The structure of Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5, PDB code: 5sv1 was solved by H.Celia, I.Botos, R.Lloubes, S.K.Buchanan, N.Noinaj, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.00 / 3.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 104.942, 196.748, 210.599, 90.00, 90.00, 90.00
R / Rfree (%) 25.5 / 30

Mercury Binding Sites:

The binding sites of Mercury atom in the Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5 (pdb code 5sv1). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 10 binding sites of Mercury where determined in the Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5, PDB code: 5sv1:
Jump to Mercury binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Mercury binding site 1 out of 10 in 5sv1

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Mercury binding site 1 out of 10 in the Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg301

b:0.3
occ:1.00
 SG A:CYS25 2.3 73.5 1.0
CB A:CYS25 3.6 74.1 1.0
C A:CYS25 4.6 89.6 1.0
O A:CYS25 4.7 87.0 1.0
CA A:CYS25 4.7 74.9 1.0
N A:VAL26 4.8 85.9 1.0

Mercury binding site 2 out of 10 in 5sv1

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Mercury binding site 2 out of 10 in the Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg301

b:0.2
occ:1.01
 SG B:CYS25 2.4 0.4 1.0
CB B:CYS25 3.0 0.2 1.0
CA B:CYS25 3.2 0.6 1.0
O B:CYS25 4.1 96.3 1.0
C B:CYS25 4.1 98.0 1.0
N B:CYS25 4.3 0.3 1.0
CG2 B:ILE28 4.7 84.2 1.0
CB B:ILE28 4.8 86.3 1.0
O B:LYS24 5.0 1.0 1.0
C B:LYS24 5.0 97.5 1.0

Mercury binding site 3 out of 10 in 5sv1

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Mercury binding site 3 out of 10 in the Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg301

b:0.2
occ:1.00
 SG C:CYS25 2.4 0.7 1.0
CB C:CYS25 3.6 0.8 1.0
CA C:CYS25 3.9 99.2 1.0
N C:CYS25 4.3 0.3 1.0
CD1 C:ILE21 4.5 0.4 1.0
C C:LYS24 4.8 0.1 1.0
O C:ILE21 4.9 0.3 1.0

Mercury binding site 4 out of 10 in 5sv1

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Mercury binding site 4 out of 10 in the Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Hg301

b:0.7
occ:1.01
 SG D:CYS25 2.4 0.2 1.0
CB D:CYS25 4.0 1.0 1.0
CA D:CYS25 4.4 0.8 1.0
CD1 D:ILE28 4.8 0.8 1.0
CG1 D:ILE28 4.9 0.1 1.0
N D:CYS25 5.0 0.8 1.0

Mercury binding site 5 out of 10 in 5sv1

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Mercury binding site 5 out of 10 in the Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Hg301

b:0.3
occ:1.01
 SG E:CYS25 2.5 0.3 1.0
CB E:CYS25 2.9 0.1 1.0
CA E:CYS25 3.4 1.0 1.0
CD1 E:ILE28 3.5 0.6 1.0
CG1 E:ILE28 3.8 0.1 1.0
O E:CYS25 4.3 0.8 1.0
C E:CYS25 4.3 0.9 1.0
N E:CYS25 4.5 0.7 1.0

Mercury binding site 6 out of 10 in 5sv1

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Mercury binding site 6 out of 10 in the Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 6 of Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Hg301

b:0.3
occ:1.00
 SG F:CYS25 2.4 81.2 1.0
CB F:CYS25 3.7 85.8 1.0
C F:CYS25 4.9 95.3 1.0
CA F:CYS25 4.9 89.6 1.0

Mercury binding site 7 out of 10 in 5sv1

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Mercury binding site 7 out of 10 in the Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 7 of Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Hg301

b:0.6
occ:1.01
 SG G:CYS25 2.4 0.5 1.0
CB G:CYS25 2.7 0.2 1.0
CA G:CYS25 3.0 0.5 1.0
C G:CYS25 3.9 0.8 1.0
O G:CYS25 3.9 0.8 1.0
N G:CYS25 4.1 0.1 1.0
C G:LYS24 5.0 0.2 1.0

Mercury binding site 8 out of 10 in 5sv1

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Mercury binding site 8 out of 10 in the Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 8 of Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Hg301

b:0.4
occ:1.01
 SG H:CYS25 2.4 0.0 1.0
CB H:CYS25 3.8 0.7 1.0
CA H:CYS25 3.9 0.6 1.0
N H:CYS25 4.2 0.3 1.0
CD1 H:ILE21 4.6 0.6 1.0
O H:ILE21 4.8 0.9 1.0
C H:LYS24 4.9 0.1 1.0

Mercury binding site 9 out of 10 in 5sv1

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Mercury binding site 9 out of 10 in the Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 9 of Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Hg301

b:0.1
occ:1.01
 SG I:CYS25 2.5 0.0 1.0
CB I:CYS25 2.8 0.8 1.0
CA I:CYS25 4.0 0.8 1.0
N I:CYS25 4.9 0.0 1.0

Mercury binding site 10 out of 10 in 5sv1

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Mercury binding site 10 out of 10 in the Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 10 of Structure of the Exbb/Exbd Complex From E. Coli at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Hg301

b:0.7
occ:1.01
 SG J:CYS25 2.4 0.1 1.0
CD1 J:ILE28 2.9 0.1 1.0
CB J:CYS25 3.6 0.3 1.0
CG1 J:ILE28 3.6 0.8 1.0
O J:CYS25 4.0 0.9 1.0
CA J:CYS25 4.0 0.0 1.0
C J:CYS25 4.4 0.6 1.0

Reference:

H.Celia, N.Noinaj, S.D.Zakharov, E.Bordignon, I.Botos, M.Santamaria, T.J.Barnard, W.A.Cramer, R.Lloubes, S.K.Buchanan. Structural Insight Into the Role of the Ton Complex in Energy Transduction. Nature V. 538 60 2016.
ISSN: ESSN 1476-4687
PubMed: 27654919
DOI: 10.1038/NATURE19757
Page generated: Sun Aug 11 06:52:12 2024

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