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Mercury in PDB 5yzy: ATVAL1 B3 Domain in Complex with 13BP-Dna

Protein crystallography data

The structure of ATVAL1 B3 Domain in Complex with 13BP-Dna, PDB code: 5yzy was solved by B.X.Wu, M.M.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.61
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 87.780, 87.780, 148.735, 90.00, 90.00, 90.00
R / Rfree (%) 21 / 25.7

Mercury Binding Sites:

The binding sites of Mercury atom in the ATVAL1 B3 Domain in Complex with 13BP-Dna (pdb code 5yzy). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the ATVAL1 B3 Domain in Complex with 13BP-Dna, PDB code: 5yzy:

Mercury binding site 1 out of 1 in 5yzy

Go back to Mercury Binding Sites List in 5yzy
Mercury binding site 1 out of 1 in the ATVAL1 B3 Domain in Complex with 13BP-Dna


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of ATVAL1 B3 Domain in Complex with 13BP-Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg501

b:0.3
occ:1.00
SG C:CYS365 2.8 72.7 1.0
CB C:CYS365 3.2 53.2 1.0
CE C:MET390 3.3 38.5 1.0
CZ C:PHE344 4.1 24.2 1.0
SD C:MET390 4.1 39.0 1.0
C C:CYS365 4.2 38.4 1.0
CA C:CYS365 4.3 44.5 1.0
CE C:MET369 4.4 36.6 1.0
O C:CYS365 4.4 31.3 1.0
N C:ILE366 4.5 37.7 1.0
CE1 C:PHE344 4.6 23.8 1.0
CG1 C:ILE366 4.6 43.2 1.0
O C:VAL362 4.8 35.2 1.0
SD C:MET369 4.8 33.2 1.0
CA C:ILE366 5.0 39.4 1.0

Reference:

B.X.Wu, M.M.Zhang, S.C.Su, H.H.Liu, J.H.Gan, J.B.Ma. Structural Insight Into the Role of VAL1 B3 Domain For Targeting to Flc Locus in Arabidopsis Thaliana. Biochem. Biophys. Res. 2018COMMUN..
ISSN: ESSN 1090-2104
PubMed: 29733847
DOI: 10.1016/J.BBRC.2018.05.002
Page generated: Sun Dec 13 19:13:24 2020

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