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Mercury in PDB 6cvl: Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein

Protein crystallography data

The structure of Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein, PDB code: 6cvl was solved by P.T.Nguyen, J.T.Kaiser, D.C.Rees, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.85 / 2.95
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 107.960, 107.960, 354.520, 90.00, 90.00, 120.00
R / Rfree (%) 20.8 / 22.6

Other elements in 6cvl:

The structure of Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein also contains other interesting chemical elements:

Iodine (I) 2 atoms

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein (pdb code 6cvl). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 3 binding sites of Mercury where determined in the Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein, PDB code: 6cvl:
Jump to Mercury binding site number: 1; 2; 3;

Mercury binding site 1 out of 3 in 6cvl

Go back to Mercury Binding Sites List in 6cvl
Mercury binding site 1 out of 3 in the Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg401

b:0.3
occ:1.00
HE1 C:HIS0 2.7 0.6 1.0
CE1 C:HIS0 3.2 0.2 1.0
ND1 C:HIS0 3.3 0.5 1.0
H1 C:HIS0 3.5 0.2 1.0
N C:HIS0 4.4 0.1 1.0
NE2 C:HIS0 4.4 0.9 1.0
H3 C:HIS0 4.6 0.2 1.0
CG C:HIS0 4.6 0.1 1.0
HB3 C:PRO29 4.7 97.5 1.0
H2 C:HIS0 4.8 0.2 1.0
HE2 C:HIS0 4.9 0.3 1.0

Mercury binding site 2 out of 3 in 6cvl

Go back to Mercury Binding Sites List in 6cvl
Mercury binding site 2 out of 3 in the Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg402

b:0.8
occ:1.00
HG C:CYS164 2.0 81.3 1.0
HB3 C:ALA167 2.8 75.0 1.0
SG C:CYS164 3.0 70.1 1.0
HD11 C:LEU183 3.1 0.0 1.0
HB3 C:CYS164 3.1 85.9 1.0
CB C:CYS164 3.5 73.0 1.0
HD13 C:LEU183 3.5 0.0 1.0
HB2 C:CYS164 3.5 85.9 1.0
CD1 C:LEU183 3.7 98.1 1.0
CB C:ALA167 3.8 60.1 1.0
HB2 C:LEU196 3.8 83.1 1.0
HD22 C:LEU196 3.8 86.7 1.0
HG23 C:THR168 3.8 78.9 1.0
HB2 C:ALA167 4.0 75.0 1.0
HD12 C:LEU183 4.0 0.0 1.0
HB3 C:LEU196 4.0 83.1 1.0
H C:ALA167 4.1 76.5 1.0
HB1 C:ALA167 4.1 75.0 1.0
HD21 C:LEU180 4.2 0.0 1.0
HD23 C:LEU180 4.3 0.0 1.0
CB C:LEU196 4.3 69.5 1.0
HD11 C:ILE207 4.6 0.8 1.0
CD2 C:LEU180 4.6 95.6 1.0
HG21 C:ILE194 4.6 84.4 1.0
CD2 C:LEU196 4.7 74.9 1.0
HD22 C:LEU180 4.7 0.0 1.0
CG2 C:THR168 4.7 67.8 1.0
HG21 C:THR168 4.7 78.9 1.0
HD21 C:LEU183 4.7 0.2 1.0
HD12 C:ILE87 4.7 70.4 1.0
CA C:ALA167 4.8 59.7 1.0
N C:ALA167 4.8 60.2 1.0
HD13 C:LEU196 4.9 85.4 1.0
HD23 C:LEU196 4.9 86.7 1.0
CA C:CYS164 5.0 73.8 1.0
HD22 C:LEU183 5.0 0.2 1.0
HG11 C:VAL203 5.0 88.0 1.0
HD21 C:LEU162 5.0 0.9 1.0
CG C:LEU183 5.0 95.4 1.0

Mercury binding site 3 out of 3 in 6cvl

Go back to Mercury Binding Sites List in 6cvl
Mercury binding site 3 out of 3 in the Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Hg401

b:0.9
occ:1.00
I D:IOD403 2.5 0.6 1.0
HB3 D:ALA167 3.1 79.8 1.0
H D:ALA167 3.3 77.6 1.0
HD22 D:LEU196 3.4 80.0 1.0
HG1 D:THR168 3.4 78.5 1.0
HB2 D:LEU196 3.4 78.3 1.0
HB3 D:CYS164 3.4 75.2 1.0
HD13 D:LEU196 3.6 79.7 1.0
HG11 D:VAL203 3.6 86.8 1.0
HG D:CYS164 3.7 80.8 1.0
HB2 D:CYS164 3.7 75.2 1.0
CB D:CYS164 3.9 58.3 1.0
HD21 D:LEU180 3.9 93.0 1.0
N D:ALA167 4.0 66.1 1.0
CB D:ALA167 4.0 68.9 1.0
H D:THR168 4.1 77.2 1.0
I D:IOD402 4.2 0.8 1.0
CB D:LEU196 4.2 59.2 1.0
OG1 D:THR168 4.2 73.8 1.0
SG D:CYS164 4.2 65.1 1.0
CD2 D:LEU196 4.3 62.7 1.0
HB3 D:LEU196 4.3 78.3 1.0
CD1 D:LEU196 4.4 61.3 1.0
N D:THR168 4.4 70.7 1.0
CA D:ALA167 4.4 66.7 1.0
CG D:LEU196 4.5 61.6 1.0
HB2 D:ALA167 4.5 79.8 1.0
HD11 D:LEU196 4.5 79.7 1.0
CG1 D:VAL203 4.5 76.9 1.0
HD11 D:LEU183 4.5 98.5 1.0
HB1 D:ALA167 4.6 79.8 1.0
CD2 D:LEU180 4.6 73.8 1.0
C D:ALA167 4.6 66.3 1.0
HA D:GLN166 4.6 76.4 1.0
HD23 D:LEU180 4.6 93.0 1.0
HD22 D:LEU180 4.7 93.0 1.0
HB D:THR198 4.7 74.3 1.0
HD11 D:ILE207 4.7 0.1 1.0
HG13 D:VAL203 4.7 86.8 1.0
O D:ILE197 4.7 57.4 1.0
HD23 D:LEU196 4.8 80.0 1.0
CB D:THR168 4.8 71.9 1.0
HD21 D:LEU196 4.8 80.0 1.0
HG12 D:VAL203 4.8 86.8 1.0
HG21 D:VAL203 4.8 84.2 1.0
HD13 D:LEU183 4.9 98.5 1.0
H D:GLN166 5.0 75.1 1.0
C D:GLN166 5.0 62.3 1.0

Reference:

P.T.Nguyen, J.Y.Lai, A.T.Lee, J.T.Kaiser, D.C.Rees. Noncanonical Role For the Binding Protein in Substrate Uptake By the Metni Methionine Atp Binding Cassette (Abc) Transporter. Proc. Natl. Acad. Sci. V. 115 10596 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30352853
DOI: 10.1073/PNAS.1811003115
Page generated: Sun Dec 13 19:13:52 2020

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