Atomistry » Mercury » PDB 6bzi-6rjj » 6cvl
Atomistry »
  Mercury »
    PDB 6bzi-6rjj »
      6cvl »

Mercury in PDB 6cvl: Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein

Protein crystallography data

The structure of Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein, PDB code: 6cvl was solved by P.T.Nguyen, J.T.Kaiser, D.C.Rees, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.85 / 2.95
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 107.960, 107.960, 354.520, 90.00, 90.00, 120.00
R / Rfree (%) 20.8 / 22.6

Other elements in 6cvl:

The structure of Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein also contains other interesting chemical elements:

Iodine (I) 2 atoms

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein (pdb code 6cvl). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 3 binding sites of Mercury where determined in the Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein, PDB code: 6cvl:
Jump to Mercury binding site number: 1; 2; 3;

Mercury binding site 1 out of 3 in 6cvl

Go back to Mercury Binding Sites List in 6cvl
Mercury binding site 1 out of 3 in the Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg401

b:0.3
occ:1.00
HE1 C:HIS0 2.7 0.6 1.0
CE1 C:HIS0 3.2 0.2 1.0
ND1 C:HIS0 3.3 0.5 1.0
H1 C:HIS0 3.5 0.2 1.0
N C:HIS0 4.4 0.1 1.0
NE2 C:HIS0 4.4 0.9 1.0
H3 C:HIS0 4.6 0.2 1.0
CG C:HIS0 4.6 0.1 1.0
HB3 C:PRO29 4.7 97.5 1.0
H2 C:HIS0 4.8 0.2 1.0
HE2 C:HIS0 4.9 0.3 1.0

Mercury binding site 2 out of 3 in 6cvl

Go back to Mercury Binding Sites List in 6cvl
Mercury binding site 2 out of 3 in the Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg402

b:0.8
occ:1.00
HG C:CYS164 2.0 81.3 1.0
HB3 C:ALA167 2.8 75.0 1.0
SG C:CYS164 3.0 70.1 1.0
HD11 C:LEU183 3.1 0.0 1.0
HB3 C:CYS164 3.1 85.9 1.0
CB C:CYS164 3.5 73.0 1.0
HD13 C:LEU183 3.5 0.0 1.0
HB2 C:CYS164 3.5 85.9 1.0
CD1 C:LEU183 3.7 98.1 1.0
CB C:ALA167 3.8 60.1 1.0
HB2 C:LEU196 3.8 83.1 1.0
HD22 C:LEU196 3.8 86.7 1.0
HG23 C:THR168 3.8 78.9 1.0
HB2 C:ALA167 4.0 75.0 1.0
HD12 C:LEU183 4.0 0.0 1.0
HB3 C:LEU196 4.0 83.1 1.0
H C:ALA167 4.1 76.5 1.0
HB1 C:ALA167 4.1 75.0 1.0
HD21 C:LEU180 4.2 0.0 1.0
HD23 C:LEU180 4.3 0.0 1.0
CB C:LEU196 4.3 69.5 1.0
HD11 C:ILE207 4.6 0.8 1.0
CD2 C:LEU180 4.6 95.6 1.0
HG21 C:ILE194 4.6 84.4 1.0
CD2 C:LEU196 4.7 74.9 1.0
HD22 C:LEU180 4.7 0.0 1.0
CG2 C:THR168 4.7 67.8 1.0
HG21 C:THR168 4.7 78.9 1.0
HD21 C:LEU183 4.7 0.2 1.0
HD12 C:ILE87 4.7 70.4 1.0
CA C:ALA167 4.8 59.7 1.0
N C:ALA167 4.8 60.2 1.0
HD13 C:LEU196 4.9 85.4 1.0
HD23 C:LEU196 4.9 86.7 1.0
CA C:CYS164 5.0 73.8 1.0
HD22 C:LEU183 5.0 0.2 1.0
HG11 C:VAL203 5.0 88.0 1.0
HD21 C:LEU162 5.0 0.9 1.0
CG C:LEU183 5.0 95.4 1.0

Mercury binding site 3 out of 3 in 6cvl

Go back to Mercury Binding Sites List in 6cvl
Mercury binding site 3 out of 3 in the Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of the Escherichia Coli Atpgs-Bound Metni Methionine Abc Transporter in Complex with Its Metq Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Hg401

b:0.9
occ:1.00
I D:IOD403 2.5 0.6 1.0
HB3 D:ALA167 3.1 79.8 1.0
H D:ALA167 3.3 77.6 1.0
HD22 D:LEU196 3.4 80.0 1.0
HG1 D:THR168 3.4 78.5 1.0
HB2 D:LEU196 3.4 78.3 1.0
HB3 D:CYS164 3.4 75.2 1.0
HD13 D:LEU196 3.6 79.7 1.0
HG11 D:VAL203 3.6 86.8 1.0
HG D:CYS164 3.7 80.8 1.0
HB2 D:CYS164 3.7 75.2 1.0
CB D:CYS164 3.9 58.3 1.0
HD21 D:LEU180 3.9 93.0 1.0
N D:ALA167 4.0 66.1 1.0
CB D:ALA167 4.0 68.9 1.0
H D:THR168 4.1 77.2 1.0
I D:IOD402 4.2 0.8 1.0
CB D:LEU196 4.2 59.2 1.0
OG1 D:THR168 4.2 73.8 1.0
SG D:CYS164 4.2 65.1 1.0
CD2 D:LEU196 4.3 62.7 1.0
HB3 D:LEU196 4.3 78.3 1.0
CD1 D:LEU196 4.4 61.3 1.0
N D:THR168 4.4 70.7 1.0
CA D:ALA167 4.4 66.7 1.0
CG D:LEU196 4.5 61.6 1.0
HB2 D:ALA167 4.5 79.8 1.0
HD11 D:LEU196 4.5 79.7 1.0
CG1 D:VAL203 4.5 76.9 1.0
HD11 D:LEU183 4.5 98.5 1.0
HB1 D:ALA167 4.6 79.8 1.0
CD2 D:LEU180 4.6 73.8 1.0
C D:ALA167 4.6 66.3 1.0
HA D:GLN166 4.6 76.4 1.0
HD23 D:LEU180 4.6 93.0 1.0
HD22 D:LEU180 4.7 93.0 1.0
HB D:THR198 4.7 74.3 1.0
HD11 D:ILE207 4.7 0.1 1.0
HG13 D:VAL203 4.7 86.8 1.0
O D:ILE197 4.7 57.4 1.0
HD23 D:LEU196 4.8 80.0 1.0
CB D:THR168 4.8 71.9 1.0
HD21 D:LEU196 4.8 80.0 1.0
HG12 D:VAL203 4.8 86.8 1.0
HG21 D:VAL203 4.8 84.2 1.0
HD13 D:LEU183 4.9 98.5 1.0
H D:GLN166 5.0 75.1 1.0
C D:GLN166 5.0 62.3 1.0

Reference:

P.T.Nguyen, J.Y.Lai, A.T.Lee, J.T.Kaiser, D.C.Rees. Noncanonical Role For the Binding Protein in Substrate Uptake By the Metni Methionine Atp Binding Cassette (Abc) Transporter. Proc. Natl. Acad. Sci. V. 115 10596 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30352853
DOI: 10.1073/PNAS.1811003115
Page generated: Sun Aug 11 07:16:26 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy