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Mercury in PDB 6fmw: Imisx-Ep of Hg-Baca Cocrystallization

Enzymatic activity of Imisx-Ep of Hg-Baca Cocrystallization

All present enzymatic activity of Imisx-Ep of Hg-Baca Cocrystallization:
3.6.1.27;

Protein crystallography data

The structure of Imisx-Ep of Hg-Baca Cocrystallization, PDB code: 6fmw was solved by C.-Y.Huang, V.Olieric, N.Howe, R.Warshamanage, T.Weinert, E.Panepucci, L.Vogeley, S.Basu, K.Diederichs, M.Caffrey, M.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.54 / 2.60
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 114.060, 145.130, 39.990, 90.00, 90.00, 90.00
R / Rfree (%) 22.4 / 25.4

Mercury Binding Sites:

The binding sites of Mercury atom in the Imisx-Ep of Hg-Baca Cocrystallization (pdb code 6fmw). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Imisx-Ep of Hg-Baca Cocrystallization, PDB code: 6fmw:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in 6fmw

Go back to Mercury Binding Sites List in 6fmw
Mercury binding site 1 out of 2 in the Imisx-Ep of Hg-Baca Cocrystallization


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Imisx-Ep of Hg-Baca Cocrystallization within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg301

b:42.5
occ:0.84
SG A:CYS165 2.6 35.9 1.0
O A:CYS162 2.6 41.3 1.0
SG A:CYS162 2.9 47.5 1.0
CB A:CYS165 3.2 36.4 1.0
CA A:CYS162 3.3 32.3 1.0
C A:CYS162 3.3 42.5 1.0
CB A:CYS162 3.6 41.4 1.0
CB A:PRO101 3.8 33.6 1.0
CA A:CYS165 4.4 39.6 1.0
N A:CYS165 4.5 40.6 1.0
N A:PHE163 4.6 32.4 1.0
N A:CYS162 4.6 36.6 1.0
O A:GLY161 4.7 38.8 1.0
C A:PRO101 4.8 41.0 1.0
CA A:PRO101 4.8 39.0 1.0
CD2 A:LEU105 4.9 55.5 1.0
CG A:PRO101 5.0 41.8 1.0
O A:PRO101 5.0 40.7 1.0

Mercury binding site 2 out of 2 in 6fmw

Go back to Mercury Binding Sites List in 6fmw
Mercury binding site 2 out of 2 in the Imisx-Ep of Hg-Baca Cocrystallization


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Imisx-Ep of Hg-Baca Cocrystallization within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg302

b:0.8
occ:0.52
SG A:CYS138 2.8 51.1 1.0
CB A:CYS138 3.3 44.3 1.0
O23 A:OLC305 3.9 66.1 1.0
O20 A:OLC305 4.2 68.1 1.0
CA A:CYS138 4.2 36.9 1.0
O A:CYS138 4.6 34.5 1.0
C2 A:OLC305 4.6 62.2 1.0
C1 A:OLC305 4.8 59.0 1.0
C A:CYS138 4.9 37.8 1.0

Reference:

C.Y.Huang, V.Olieric, N.Howe, R.Warshamanage, T.Weinert, E.Panepucci, L.Vogeley, S.Basu, K.Diederichs, M.Caffrey, M.Wang. In Situ Serial Crystallography For Rapid De Novo Membrane Protein Structure Determination. Commun Biol V. 1 124 2018.
ISSN: ESSN 2399-3642
PubMed: 30272004
DOI: 10.1038/S42003-018-0123-6
Page generated: Sun Dec 13 19:13:59 2020

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