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Mercury in PDB 6fy6: Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Major Species)

Mercury Binding Sites:

The binding sites of Mercury atom in the Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Major Species) (pdb code 6fy6). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Major Species), PDB code: 6fy6:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in 6fy6

Go back to Mercury Binding Sites List in 6fy6
Mercury binding site 1 out of 2 in the Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Major Species)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Major Species) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg101

b:0.0
occ:1.00
N3 A:DT11 2.0 0.0 1.0
N3 B:DC18 2.0 0.0 1.0
H41 B:DC18 2.7 0.0 1.0
C2 B:DC18 2.9 0.0 1.0
C4 A:DT11 2.9 0.0 1.0
C2 A:DT11 2.9 0.0 1.0
O2 B:DC18 3.0 0.0 1.0
C4 B:DC18 3.0 0.0 1.0
O4 A:DT11 3.0 0.0 1.0
O2 A:DT11 3.1 0.0 1.0
N4 B:DC18 3.2 0.0 1.0
N1 A:DA12 3.3 0.0 1.0
H3 B:DT19 3.4 0.0 1.0
C6 A:DA12 3.5 0.0 1.0
N3 B:DT19 3.7 0.0 1.0
N6 A:DA12 3.8 0.0 1.0
C2 A:DA12 3.8 0.0 1.0
H3 B:DT17 3.8 0.0 1.0
H61 A:DA12 3.8 0.0 1.0
H61 A:DA10 3.9 0.0 1.0
N6 A:DA10 4.0 0.0 1.0
C5 A:DA12 4.1 0.0 1.0
N1 A:DA10 4.1 0.0 1.0
C6 A:DA10 4.1 0.0 1.0
H2 A:DA12 4.2 0.0 1.0
C4 B:DT19 4.2 0.0 1.0
N1 B:DC18 4.2 0.0 1.0
H42 B:DC18 4.2 0.0 1.0
C2 B:DT19 4.2 0.0 1.0
N1 A:DT11 4.2 0.0 1.0
O4 B:DT17 4.2 0.0 1.0
C5 A:DT11 4.3 0.0 1.0
O4 B:DT19 4.3 0.0 1.0
H62 A:DA12 4.3 0.0 1.0
N3 B:DT17 4.3 0.0 1.0
C5 B:DC18 4.4 0.0 1.0
N3 A:DA12 4.4 0.0 1.0
O2 B:DT19 4.4 0.0 1.0
C4 A:DA12 4.4 0.0 1.0
H62 A:DA10 4.5 0.0 1.0
C4 B:DT17 4.6 0.0 1.0
C6 A:DT11 4.7 0.0 1.0
C2 A:DA10 4.8 0.0 1.0
C6 B:DC18 4.8 0.0 1.0
C5 A:DA10 4.9 0.0 1.0
N7 A:DA12 4.9 0.0 1.0

Mercury binding site 2 out of 2 in 6fy6

Go back to Mercury Binding Sites List in 6fy6
Mercury binding site 2 out of 2 in the Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Major Species)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Major Species) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg102

b:0.0
occ:1.00
N3 B:DT25 2.0 0.0 1.0
N3 A:DC4 2.0 0.0 1.0
H41 A:DC4 2.7 0.0 1.0
C2 A:DC4 2.9 0.0 1.0
C4 B:DT25 2.9 0.0 1.0
C2 B:DT25 2.9 0.0 1.0
O2 A:DC4 3.0 0.0 1.0
C4 A:DC4 3.0 0.0 1.0
O4 B:DT25 3.0 0.0 1.0
O2 B:DT25 3.1 0.0 1.0
N4 A:DC4 3.2 0.0 1.0
N1 B:DA26 3.3 0.0 1.0
H3 A:DT5 3.5 0.0 1.0
C6 B:DA26 3.5 0.0 1.0
N3 A:DT5 3.7 0.0 1.0
N6 B:DA26 3.8 0.0 1.0
C2 B:DA26 3.8 0.0 1.0
H3 A:DT3 3.8 0.0 1.0
H61 B:DA26 3.8 0.0 1.0
H61 B:DA24 3.9 0.0 1.0
N6 B:DA24 4.0 0.0 1.0
C5 B:DA26 4.1 0.0 1.0
N1 B:DA24 4.1 0.0 1.0
C6 B:DA24 4.1 0.0 1.0
C4 A:DT5 4.2 0.0 1.0
H2 B:DA26 4.2 0.0 1.0
N1 A:DC4 4.2 0.0 1.0
H42 A:DC4 4.2 0.0 1.0
C2 A:DT5 4.2 0.0 1.0
N1 B:DT25 4.2 0.0 1.0
O4 A:DT3 4.2 0.0 1.0
C5 B:DT25 4.3 0.0 1.0
O4 A:DT5 4.3 0.0 1.0
H62 B:DA26 4.3 0.0 1.0
N3 A:DT3 4.3 0.0 1.0
C5 A:DC4 4.3 0.0 1.0
N3 B:DA26 4.4 0.0 1.0
C4 B:DA26 4.4 0.0 1.0
O2 A:DT5 4.4 0.0 1.0
H62 B:DA24 4.5 0.0 1.0
C4 A:DT3 4.6 0.0 1.0
C6 B:DT25 4.7 0.0 1.0
C6 A:DC4 4.8 0.0 1.0
C2 B:DA24 4.8 0.0 1.0
C5 B:DA24 4.9 0.0 1.0
N7 B:DA26 4.9 0.0 1.0

Reference:

O.P.Schmidt, S.Jurt, S.Johannsen, A.Karimi, R.K.O.Sigel, N.W.Luedtke. Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition. Nat Commun V. 10 4818 2019.
ISSN: ESSN 2041-1723
PubMed: 31645548
DOI: 10.1038/S41467-019-12440-X
Page generated: Sun Dec 13 19:14:02 2020

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