Mercury in PDB 6fy6: Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Major Species)
Mercury Binding Sites:
The binding sites of Mercury atom in the Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Major Species)
(pdb code 6fy6). This binding sites where shown within
5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the
Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Major Species), PDB code: 6fy6:
Jump to Mercury binding site number:
1;
2;
Mercury binding site 1 out
of 2 in 6fy6
Go back to
Mercury Binding Sites List in 6fy6
Mercury binding site 1 out
of 2 in the Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Major Species)
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 1 of Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Major Species) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg101
b:0.0
occ:1.00
|
N3
|
A:DT11
|
2.0
|
0.0
|
1.0
|
N3
|
B:DC18
|
2.0
|
0.0
|
1.0
|
H41
|
B:DC18
|
2.7
|
0.0
|
1.0
|
C2
|
B:DC18
|
2.9
|
0.0
|
1.0
|
C4
|
A:DT11
|
2.9
|
0.0
|
1.0
|
C2
|
A:DT11
|
2.9
|
0.0
|
1.0
|
O2
|
B:DC18
|
3.0
|
0.0
|
1.0
|
C4
|
B:DC18
|
3.0
|
0.0
|
1.0
|
O4
|
A:DT11
|
3.0
|
0.0
|
1.0
|
O2
|
A:DT11
|
3.1
|
0.0
|
1.0
|
N4
|
B:DC18
|
3.2
|
0.0
|
1.0
|
N1
|
A:DA12
|
3.3
|
0.0
|
1.0
|
H3
|
B:DT19
|
3.4
|
0.0
|
1.0
|
C6
|
A:DA12
|
3.5
|
0.0
|
1.0
|
N3
|
B:DT19
|
3.7
|
0.0
|
1.0
|
N6
|
A:DA12
|
3.8
|
0.0
|
1.0
|
C2
|
A:DA12
|
3.8
|
0.0
|
1.0
|
H3
|
B:DT17
|
3.8
|
0.0
|
1.0
|
H61
|
A:DA12
|
3.8
|
0.0
|
1.0
|
H61
|
A:DA10
|
3.9
|
0.0
|
1.0
|
N6
|
A:DA10
|
4.0
|
0.0
|
1.0
|
C5
|
A:DA12
|
4.1
|
0.0
|
1.0
|
N1
|
A:DA10
|
4.1
|
0.0
|
1.0
|
C6
|
A:DA10
|
4.1
|
0.0
|
1.0
|
H2
|
A:DA12
|
4.2
|
0.0
|
1.0
|
C4
|
B:DT19
|
4.2
|
0.0
|
1.0
|
N1
|
B:DC18
|
4.2
|
0.0
|
1.0
|
H42
|
B:DC18
|
4.2
|
0.0
|
1.0
|
C2
|
B:DT19
|
4.2
|
0.0
|
1.0
|
N1
|
A:DT11
|
4.2
|
0.0
|
1.0
|
O4
|
B:DT17
|
4.2
|
0.0
|
1.0
|
C5
|
A:DT11
|
4.3
|
0.0
|
1.0
|
O4
|
B:DT19
|
4.3
|
0.0
|
1.0
|
H62
|
A:DA12
|
4.3
|
0.0
|
1.0
|
N3
|
B:DT17
|
4.3
|
0.0
|
1.0
|
C5
|
B:DC18
|
4.4
|
0.0
|
1.0
|
N3
|
A:DA12
|
4.4
|
0.0
|
1.0
|
O2
|
B:DT19
|
4.4
|
0.0
|
1.0
|
C4
|
A:DA12
|
4.4
|
0.0
|
1.0
|
H62
|
A:DA10
|
4.5
|
0.0
|
1.0
|
C4
|
B:DT17
|
4.6
|
0.0
|
1.0
|
C6
|
A:DT11
|
4.7
|
0.0
|
1.0
|
C2
|
A:DA10
|
4.8
|
0.0
|
1.0
|
C6
|
B:DC18
|
4.8
|
0.0
|
1.0
|
C5
|
A:DA10
|
4.9
|
0.0
|
1.0
|
N7
|
A:DA12
|
4.9
|
0.0
|
1.0
|
|
Mercury binding site 2 out
of 2 in 6fy6
Go back to
Mercury Binding Sites List in 6fy6
Mercury binding site 2 out
of 2 in the Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Major Species)
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 2 of Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Major Species) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg102
b:0.0
occ:1.00
|
N3
|
B:DT25
|
2.0
|
0.0
|
1.0
|
N3
|
A:DC4
|
2.0
|
0.0
|
1.0
|
H41
|
A:DC4
|
2.7
|
0.0
|
1.0
|
C2
|
A:DC4
|
2.9
|
0.0
|
1.0
|
C4
|
B:DT25
|
2.9
|
0.0
|
1.0
|
C2
|
B:DT25
|
2.9
|
0.0
|
1.0
|
O2
|
A:DC4
|
3.0
|
0.0
|
1.0
|
C4
|
A:DC4
|
3.0
|
0.0
|
1.0
|
O4
|
B:DT25
|
3.0
|
0.0
|
1.0
|
O2
|
B:DT25
|
3.1
|
0.0
|
1.0
|
N4
|
A:DC4
|
3.2
|
0.0
|
1.0
|
N1
|
B:DA26
|
3.3
|
0.0
|
1.0
|
H3
|
A:DT5
|
3.5
|
0.0
|
1.0
|
C6
|
B:DA26
|
3.5
|
0.0
|
1.0
|
N3
|
A:DT5
|
3.7
|
0.0
|
1.0
|
N6
|
B:DA26
|
3.8
|
0.0
|
1.0
|
C2
|
B:DA26
|
3.8
|
0.0
|
1.0
|
H3
|
A:DT3
|
3.8
|
0.0
|
1.0
|
H61
|
B:DA26
|
3.8
|
0.0
|
1.0
|
H61
|
B:DA24
|
3.9
|
0.0
|
1.0
|
N6
|
B:DA24
|
4.0
|
0.0
|
1.0
|
C5
|
B:DA26
|
4.1
|
0.0
|
1.0
|
N1
|
B:DA24
|
4.1
|
0.0
|
1.0
|
C6
|
B:DA24
|
4.1
|
0.0
|
1.0
|
C4
|
A:DT5
|
4.2
|
0.0
|
1.0
|
H2
|
B:DA26
|
4.2
|
0.0
|
1.0
|
N1
|
A:DC4
|
4.2
|
0.0
|
1.0
|
H42
|
A:DC4
|
4.2
|
0.0
|
1.0
|
C2
|
A:DT5
|
4.2
|
0.0
|
1.0
|
N1
|
B:DT25
|
4.2
|
0.0
|
1.0
|
O4
|
A:DT3
|
4.2
|
0.0
|
1.0
|
C5
|
B:DT25
|
4.3
|
0.0
|
1.0
|
O4
|
A:DT5
|
4.3
|
0.0
|
1.0
|
H62
|
B:DA26
|
4.3
|
0.0
|
1.0
|
N3
|
A:DT3
|
4.3
|
0.0
|
1.0
|
C5
|
A:DC4
|
4.3
|
0.0
|
1.0
|
N3
|
B:DA26
|
4.4
|
0.0
|
1.0
|
C4
|
B:DA26
|
4.4
|
0.0
|
1.0
|
O2
|
A:DT5
|
4.4
|
0.0
|
1.0
|
H62
|
B:DA24
|
4.5
|
0.0
|
1.0
|
C4
|
A:DT3
|
4.6
|
0.0
|
1.0
|
C6
|
B:DT25
|
4.7
|
0.0
|
1.0
|
C6
|
A:DC4
|
4.8
|
0.0
|
1.0
|
C2
|
B:DA24
|
4.8
|
0.0
|
1.0
|
C5
|
B:DA24
|
4.9
|
0.0
|
1.0
|
N7
|
B:DA26
|
4.9
|
0.0
|
1.0
|
|
Reference:
O.P.Schmidt,
S.Jurt,
S.Johannsen,
A.Karimi,
R.K.O.Sigel,
N.W.Luedtke.
Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition. Nat Commun V. 10 4818 2019.
ISSN: ESSN 2041-1723
PubMed: 31645548
DOI: 10.1038/S41467-019-12440-X
Page generated: Sun Aug 11 07:16:25 2024
|