Mercury in PDB 6fy7: Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Minor Species)

The binding sites of Mercury atom in the Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Minor Species) (pdb code 6fy7). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Minor Species), PDB code: 6fy7:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in the Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Minor Species)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Minor Species) within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg101 b:0.0 occ:1.00 N3 A:DT11 2.1 0.0 1.0 N4 B:DC18 2.1 0.0 1.0 H42 B:DC18 2.8 0.0 1.0 C4 A:DT11 3.0 0.0 1.0 C4 B:DC18 3.0 0.0 1.0 C2 A:DT11 3.0 0.0 1.0 O4 A:DT11 3.0 0.0 1.0 N3 B:DC18 3.1 0.0 1.0 O2 A:DT11 3.2 0.0 1.0 O4 B:DT17 3.4 0.0 1.0 H61 A:DA12 3.5 0.0 1.0 N6 A:DA12 3.6 0.0 1.0 N6 A:DA10 3.6 0.0 1.0 H61 A:DA10 3.7 0.0 1.0 H62 A:DA10 3.7 0.0 1.0 C6 A:DA12 3.8 0.0 1.0 H62 A:DA12 3.9 0.0 1.0 H3 B:DT17 3.9 0.0 1.0 C6 A:DA10 4.0 0.0 1.0 C4 B:DT17 4.1 0.0 1.0 N1 A:DA12 4.1 0.0 1.0 N1 A:DT11 4.3 0.0 1.0 N3 B:DT17 4.3 0.0 1.0 C5 A:DT11 4.3 0.0 1.0 C5 B:DC18 4.4 0.0 1.0 H3 B:DT19 4.4 0.0 1.0 C2 B:DC18 4.4 0.0 1.0 N1 A:DA10 4.5 0.0 1.0 C5 A:DA12 4.5 0.0 1.0 C5 A:DA10 4.6 0.0 1.0 O4 B:DT19 4.7 0.0 1.0 C6 A:DT11 4.8 0.0 1.0 H5 B:DC18 4.8 0.0 1.0 N3 B:DT19 4.8 0.0 1.0 C2 A:DA12 4.9 0.0 1.0 H73 B:DT17 4.9 0.0 1.0 C4 B:DT19 5.0 0.0 1.0

Mercury binding site 2 out of 2 in the Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Minor Species)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition (Minor Species) within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg102 b:0.0 occ:1.00 N3 B:DT25 2.1 0.0 1.0 N4 A:DC4 2.1 0.0 1.0 H42 A:DC4 2.8 0.0 1.0 C4 B:DT25 3.0 0.0 1.0 C4 A:DC4 3.0 0.0 1.0 C2 B:DT25 3.0 0.0 1.0 O4 B:DT25 3.0 0.0 1.0 N3 A:DC4 3.1 0.0 1.0 O2 B:DT25 3.1 0.0 1.0 O4 A:DT3 3.4 0.0 1.0 H61 B:DA26 3.5 0.0 1.0 N6 B:DA26 3.6 0.0 1.0 N6 B:DA24 3.6 0.0 1.0 H61 B:DA24 3.7 0.0 1.0 H62 B:DA24 3.7 0.0 1.0 C6 B:DA26 3.8 0.0 1.0 H62 B:DA26 3.8 0.0 1.0 H3 A:DT3 3.9 0.0 1.0 C4 A:DT3 4.0 0.0 1.0 C6 B:DA24 4.0 0.0 1.0 N1 B:DA26 4.1 0.0 1.0 N1 B:DT25 4.3 0.0 1.0 N3 A:DT3 4.3 0.0 1.0 C5 B:DT25 4.3 0.0 1.0 C5 A:DC4 4.3 0.0 1.0 H3 A:DT5 4.4 0.0 1.0 C2 A:DC4 4.4 0.0 1.0 N1 B:DA24 4.5 0.0 1.0 C5 B:DA26 4.5 0.0 1.0 C5 B:DA24 4.6 0.0 1.0 O4 A:DT5 4.7 0.0 1.0 H5 A:DC4 4.8 0.0 1.0 C6 B:DT25 4.8 0.0 1.0 N3 A:DT5 4.8 0.0 1.0 H73 A:DT3 4.9 0.0 1.0 C2 B:DA26 4.9 0.0 1.0 C4 A:DT5 5.0 0.0 1.0

O.P.Schmidt, S.Jurt, S.Johannsen, A.Karimi, R.K.O.Sigel, N.W.Luedtke. Concerted Dynamics of Metallo-Base Pairs in An A/B-Form Helical Transition. Nat Commun V. 10 4818 2019.
ISSN: ESSN 2041-1723
PubMed: 31645548
DOI: 10.1038/S41467-019-12440-X