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Mercury in PDB 6g4h: Crystal Structure of the Periplasmic Domain of Tgpa From Pseudomonas Aeruginosa Bound to Ethylmercury

Enzymatic activity of Crystal Structure of the Periplasmic Domain of Tgpa From Pseudomonas Aeruginosa Bound to Ethylmercury

All present enzymatic activity of Crystal Structure of the Periplasmic Domain of Tgpa From Pseudomonas Aeruginosa Bound to Ethylmercury:
2.3.2.13;

Protein crystallography data

The structure of Crystal Structure of the Periplasmic Domain of Tgpa From Pseudomonas Aeruginosa Bound to Ethylmercury, PDB code: 6g4h was solved by M.Milani, E.Mastrangelo, M.Uruburu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.70 / 1.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 72.470, 72.470, 157.530, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 18.7

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of the Periplasmic Domain of Tgpa From Pseudomonas Aeruginosa Bound to Ethylmercury (pdb code 6g4h). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the Crystal Structure of the Periplasmic Domain of Tgpa From Pseudomonas Aeruginosa Bound to Ethylmercury, PDB code: 6g4h:

Mercury binding site 1 out of 1 in 6g4h

Go back to Mercury Binding Sites List in 6g4h
Mercury binding site 1 out of 1 in the Crystal Structure of the Periplasmic Domain of Tgpa From Pseudomonas Aeruginosa Bound to Ethylmercury


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of the Periplasmic Domain of Tgpa From Pseudomonas Aeruginosa Bound to Ethylmercury within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg505

b:20.1
occ:0.60
 HG A:EMC505 0.0 20.1 0.6
C1 A:EMC505 2.3 53.6 0.6
SG A:CYS404 2.3 22.9 1.0
O2 A:PO4501 2.7 26.2 1.0
C2 A:EMC505 3.1 52.3 0.6
CB A:CYS404 3.5 21.1 1.0
OH A:TYR380 3.5 24.4 1.0
O A:ALA447 3.6 20.1 1.0
CG2 A:ILE207 3.6 31.3 1.0
P A:PO4501 3.8 30.9 1.0
O4 A:PO4501 3.8 28.3 1.0
N A:CYS404 3.9 19.8 1.0
CD1 A:PHE403 4.1 22.7 1.0
CA A:CYS404 4.3 21.2 1.0
O A:HOH625 4.4 25.1 1.0
ND1 A:HIS448 4.4 23.1 1.0
O1 A:PO4501 4.5 30.4 1.0
CA A:HIS448 4.6 18.1 1.0
C A:ALA447 4.6 18.0 1.0
CB A:PHE403 4.6 23.0 1.0
CG A:PHE403 4.8 23.1 1.0
O A:HOH891 4.9 50.3 1.0
CZ A:TYR380 4.9 25.7 1.0
CE1 A:PHE403 4.9 24.5 1.0
N A:ALA405 4.9 22.2 1.0
CB A:ILE207 5.0 29.6 1.0
C A:PHE403 5.0 23.0 1.0

Reference:

M.Uruburu, E.Mastrangelo, M.Bolognesi, S.Ferrara, G.Bertoni, M.Milani. Structural and Functional Characterization of Tgpa, A Critical Protein For the Viability of Pseudomonas Aeruginosa. J.Struct.Biol. V. 205 18 2019.
ISSN: ESSN 1095-8657
PubMed: 30599211
DOI: 10.1016/J.JSB.2018.12.004
Page generated: Sun Aug 11 07:17:54 2024

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