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Mercury in PDB 6g9x: Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution

Protein crystallography data

The structure of Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution, PDB code: 6g9x was solved by D.Kalbermatter, P.Bosshart, S.Bonetti, D.Fotiadis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.79 / 2.30
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 106.765, 200.539, 64.561, 90.00, 90.00, 90.00
R / Rfree (%) 21.8 / 25.4

Mercury Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Mercury atom in the Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution (pdb code 6g9x). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 12 binding sites of Mercury where determined in the Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution, PDB code: 6g9x:
Jump to Mercury binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Mercury binding site 1 out of 12 in 6g9x

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Mercury binding site 1 out of 12 in the Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg501

b:42.1
occ:0.38
SG A:CYS362 2.3 65.3 1.0
O A:CYS362 2.5 66.8 1.0
CD2 A:JKE507 2.6 88.6 1.0
C A:CYS362 3.0 62.4 1.0
CE2 A:JKE507 3.0 90.4 1.0
CB A:CYS362 3.2 45.6 1.0
CA A:CYS362 3.6 52.6 1.0
CG1 A:JKE507 3.7 61.3 1.0
N A:GLY363 3.7 58.8 1.0
CZ A:PHE359 4.0 35.9 1.0
CA A:GLY363 4.1 53.9 1.0
CE2 A:PHE359 4.3 32.7 1.0
CZ A:JKE507 4.3 76.6 1.0
N A:GLY366 4.5 66.7 1.0
CA A:GLY366 4.7 71.9 1.0
CE1 A:PHE359 4.7 36.8 1.0
OG A:SER241 4.7 65.4 1.0
CD1 A:JKE507 4.8 66.2 1.0
N A:CYS362 4.9 49.6 1.0
C A:GLY363 4.9 59.9 1.0

Mercury binding site 2 out of 12 in 6g9x

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Mercury binding site 2 out of 12 in the Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg502

b:72.6
occ:0.49
SG A:CYS56 2.4 78.6 1.0
CB A:CYS56 3.2 79.1 1.0
C A:CYS56 3.3 85.0 1.0
O A:CYS56 3.4 92.8 1.0
CD2 A:LEU27 3.6 82.0 1.0
N A:CYS57 3.6 77.1 1.0
CA A:CYS56 3.9 81.2 1.0
CA A:CYS57 4.0 74.3 1.0
CB A:PHE60 4.2 60.2 1.0
CD2 A:PHE60 4.2 46.6 1.0
SG A:CYS57 4.3 67.8 1.0
CG A:LEU27 4.3 80.8 1.0
CE1 A:PHE53 4.4 96.0 1.0
CG A:PHE60 4.4 52.2 1.0
CD1 A:PHE53 4.6 0.1 1.0
CB A:CYS57 4.8 80.9 1.0
O A:PHE53 5.0 90.5 1.0

Mercury binding site 3 out of 12 in 6g9x

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Mercury binding site 3 out of 12 in the Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg503

b:49.1
occ:0.30
SG A:CYS389 2.3 75.0 1.0
HG B:HG503 2.7 97.8 0.4
O2 A:BNG510 3.0 0.9 1.0
O A:CYS389 3.4 61.1 1.0
CB A:CYS389 3.4 63.7 1.0
C2 A:BNG510 3.5 94.0 1.0
CA A:CYS389 3.6 47.5 1.0
C A:CYS389 3.8 47.8 1.0
CG A:LEU393 3.8 35.4 1.0
CD1 A:LEU393 4.2 38.5 1.0
CD2 A:LEU393 4.3 35.8 1.0
C3 A:BNG510 4.4 82.9 1.0
C3' A:BNG510 4.5 75.4 1.0
C1 A:BNG510 4.7 88.4 1.0
SG B:CYS389 4.7 53.8 0.5
CB A:ALA392 4.8 35.5 1.0
C2' A:BNG510 4.8 73.7 1.0
C1' A:BNG510 4.8 71.5 1.0
N A:ALA390 4.9 58.5 1.0
O3 A:BNG510 4.9 54.6 1.0
O1 A:BNG510 4.9 82.1 1.0
N A:LEU393 5.0 48.8 1.0

Mercury binding site 4 out of 12 in 6g9x

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Mercury binding site 4 out of 12 in the Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg504

b:93.8
occ:0.36
N A:CYS389 3.2 54.0 1.0
C5' A:BNG510 3.4 65.0 1.0
CA A:CYS389 3.5 47.5 1.0
O A:LEU385 3.6 63.0 1.0
CB A:CYS389 3.6 63.7 1.0
C A:LEU388 3.7 53.0 1.0
CD1 A:LEU385 3.8 82.0 1.0
C6' A:BNG510 3.9 61.4 1.0
CB A:LEU388 4.1 64.2 1.0
O A:LEU388 4.3 61.5 1.0
C4' A:BNG510 4.3 75.3 1.0
C3' A:BNG510 4.4 75.4 1.0
CA A:LEU388 4.4 49.8 1.0
C A:LEU385 4.5 60.8 1.0
CA A:LEU385 4.6 58.5 1.0
SG A:CYS389 4.9 75.0 1.0
CD2 B:LEU393 5.0 33.6 1.0
C A:CYS389 5.0 47.8 1.0

Mercury binding site 5 out of 12 in 6g9x

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Mercury binding site 5 out of 12 in the Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg505

b:57.1
occ:0.15
SG A:CYS57 2.5 67.8 1.0
O A:GLY366 3.0 71.2 1.0
CE2 A:PHE53 3.2 91.3 1.0
CD2 A:PHE53 3.2 0.4 1.0
O A:PHE53 3.4 90.5 1.0
CB A:CYS57 3.4 80.9 1.0
CZ A:PHE53 3.6 91.1 1.0
CG A:PHE53 3.8 0.5 1.0
C A:PHE53 3.8 83.3 1.0
CA A:ALA54 3.9 73.0 1.0
C A:GLY366 4.0 63.5 1.0
N A:ALA54 4.0 76.0 1.0
CE1 A:PHE53 4.1 96.0 1.0
CD1 A:PHE53 4.2 0.1 1.0
CG A:PRO370 4.5 55.3 1.0
CB A:PHE53 4.6 98.6 1.0
CA A:GLY366 4.6 71.9 1.0
CA A:CYS57 4.7 74.3 1.0
O A:ALA54 4.7 81.7 1.0
C A:ALA54 4.8 82.1 1.0
N A:CYS57 4.8 77.1 1.0
CB A:ALA54 4.8 71.2 1.0
CA A:PHE53 4.8 86.3 1.0
N A:PHE367 5.0 62.9 1.0

Mercury binding site 6 out of 12 in 6g9x

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Mercury binding site 6 out of 12 in the Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 6 of Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg506

b:54.3
occ:0.11
CG A:GLN303 3.0 38.0 1.0
NE2 A:GLN303 3.4 39.9 1.0
SG A:CYS394 3.6 45.3 0.9
CB A:GLN303 3.6 39.0 1.0
CD A:GLN303 3.7 34.4 1.0
CA A:GLY240 3.9 38.4 1.0
O A:GLY240 4.0 49.2 1.0
SD A:MET334 4.1 37.2 0.7
CE1 A:PHE300 4.3 33.7 1.0
CD1 A:PHE300 4.3 34.1 1.0
C A:GLY240 4.3 36.5 1.0
CG A:MET334 4.7 28.4 1.0
CB A:ASN330 4.7 24.6 1.0
CB A:CYS394 4.8 45.2 1.0
CZ A:PHE300 4.9 49.2 1.0
OE1 A:GLN303 4.9 41.2 1.0
N A:TYR331 4.9 34.3 1.0
CG A:PHE300 4.9 30.6 1.0
CE A:MET334 5.0 45.6 1.0
C A:ASN330 5.0 35.8 1.0
CA A:TYR331 5.0 33.0 1.0

Mercury binding site 7 out of 12 in 6g9x

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Mercury binding site 7 out of 12 in the Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 7 of Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg512

b:59.8
occ:0.33
O3 A:BNG510 2.4 54.6 1.0
N B:CYS389 2.9 59.9 1.0
CB B:CYS389 3.1 37.8 1.0
CA B:CYS389 3.1 45.0 1.0
O B:LEU385 3.2 91.9 1.0
C3 A:BNG510 3.4 82.9 1.0
C B:LEU388 3.6 52.2 1.0
C4 A:BNG510 4.1 89.2 1.0
C B:LEU385 4.1 67.8 1.0
CA B:LEU385 4.2 55.3 1.0
CB B:LEU388 4.2 62.0 1.0
O B:LEU388 4.2 58.4 1.0
CA B:LEU388 4.4 57.1 1.0
SG B:CYS389 4.4 53.8 0.5
O4 A:BNG510 4.6 89.8 1.0
CG B:LEU385 4.6 66.3 1.0
C2 A:BNG510 4.6 94.0 1.0
C B:CYS389 4.7 34.9 1.0
CB B:LEU385 4.8 68.9 1.0
O B:TYR384 4.9 71.5 1.0
N B:LEU388 4.9 57.4 1.0

Mercury binding site 8 out of 12 in 6g9x

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Mercury binding site 8 out of 12 in the Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 8 of Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg501

b:58.4
occ:0.48
SG B:CYS362 2.2 77.0 1.0
O B:CYS362 2.5 78.3 1.0
C B:CYS362 3.0 72.8 1.0
CD2 B:JKE506 3.1 82.7 1.0
CB B:CYS362 3.3 65.5 1.0
N B:GLY363 3.7 68.3 1.0
CA B:CYS362 3.7 61.3 1.0
CG1 B:JKE506 3.9 75.0 1.0
CE2 B:JKE506 3.9 70.2 1.0
CA B:GLY363 4.0 56.9 1.0
CZ B:PHE359 4.0 56.3 1.0
CE2 B:PHE359 4.2 53.9 1.0
N B:GLY366 4.4 50.3 1.0
CA B:GLY366 4.5 49.1 1.0
OG B:SER241 4.7 65.6 1.0
C B:GLY363 4.8 62.3 1.0
CE1 B:PHE359 4.9 58.2 1.0
O B:GLY363 4.9 71.4 1.0

Mercury binding site 9 out of 12 in 6g9x

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Mercury binding site 9 out of 12 in the Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 9 of Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg502

b:78.2
occ:0.47
SG B:CYS56 2.6 89.2 1.0
CB B:CYS56 3.3 86.4 1.0
C B:CYS56 3.3 76.8 1.0
O B:CYS56 3.4 82.7 1.0
N B:CYS57 3.6 75.8 1.0
CA B:CYS56 3.9 77.0 1.0
CA B:CYS57 4.0 74.3 1.0
CB B:PHE60 4.1 67.2 1.0
CD2 B:PHE60 4.1 74.3 1.0
SG B:CYS57 4.1 64.2 1.0
CD2 B:LEU27 4.2 57.4 1.0
CG B:PHE60 4.3 72.5 1.0
CG B:LEU27 4.3 61.8 1.0
CE1 B:PHE53 4.3 89.0 1.0
CD1 B:PHE53 4.5 91.8 1.0
CB B:CYS57 4.7 70.8 1.0
O B:PHE53 4.8 73.6 1.0
CE2 B:PHE60 4.9 74.2 1.0
CA B:GLY112 5.0 73.3 1.0

Mercury binding site 10 out of 12 in 6g9x

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Mercury binding site 10 out of 12 in the Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 10 of Crystal Structure of A Mfs Transporter at 2.54 Angstroem Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg503

b:97.8
occ:0.41
SG B:CYS389 2.4 53.8 0.5
HG A:HG503 2.7 49.1 0.3
O B:CYS389 3.6 57.0 1.0
CB B:CYS389 3.6 37.8 1.0
CA B:CYS389 3.9 45.0 1.0
C3' A:BNG510 4.0 75.4 1.0
C4' A:BNG510 4.0 75.3 1.0
C B:CYS389 4.0 34.9 1.0
C2' A:BNG510 4.1 73.7 1.0
CG B:LEU393 4.1 32.0 1.0
C2 A:BNG510 4.1 94.0 1.0
CD2 B:LEU393 4.4 33.6 1.0
O3 A:BNG510 4.4 54.6 1.0
O2 A:BNG510 4.5 0.9 1.0
CD1 B:LEU393 4.6 39.9 1.0
SG A:CYS389 4.7 75.0 1.0
C3 A:BNG510 4.7 82.9 1.0
CB B:ALA392 4.7 36.7 1.0
O1 A:BNG510 4.8 82.1 1.0
C1' A:BNG510 4.8 71.5 1.0

Reference:

P.D.Bosshart, D.Kalbermatter, S.Bonetti, D.Fotiadis. Mechanistic Basis of L-Lactate Transport in the SLC16 Solute Carrier Family. Nat Commun V. 10 2649 2019.
ISSN: ESSN 2041-1723
PubMed: 31201333
DOI: 10.1038/S41467-019-10566-6
Page generated: Sun Dec 13 19:14:42 2020

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