Mercury in PDB 6gm9: Human Carbonic Anhydrase II in Complex with 4-Methylbenzenesulfonamide
Enzymatic activity of Human Carbonic Anhydrase II in Complex with 4-Methylbenzenesulfonamide
All present enzymatic activity of Human Carbonic Anhydrase II in Complex with 4-Methylbenzenesulfonamide:
4.2.1.1;
Protein crystallography data
The structure of Human Carbonic Anhydrase II in Complex with 4-Methylbenzenesulfonamide, PDB code: 6gm9
was solved by
S.Gloeckner,
A.Heine,
G.Klebe,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
23.79 /
1.09
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
42.365,
41.472,
72.273,
90.00,
104.66,
90.00
|
R / Rfree (%)
|
10.3 /
11.8
|
Other elements in 6gm9:
The structure of Human Carbonic Anhydrase II in Complex with 4-Methylbenzenesulfonamide also contains other interesting chemical elements:
Mercury Binding Sites:
The binding sites of Mercury atom in the Human Carbonic Anhydrase II in Complex with 4-Methylbenzenesulfonamide
(pdb code 6gm9). This binding sites where shown within
5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the
Human Carbonic Anhydrase II in Complex with 4-Methylbenzenesulfonamide, PDB code: 6gm9:
Jump to Mercury binding site number:
1;
2;
Mercury binding site 1 out
of 2 in 6gm9
Go back to
Mercury Binding Sites List in 6gm9
Mercury binding site 1 out
of 2 in the Human Carbonic Anhydrase II in Complex with 4-Methylbenzenesulfonamide
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 1 of Human Carbonic Anhydrase II in Complex with 4-Methylbenzenesulfonamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg302
b:7.6
occ:0.16
|
HG
|
A:MBO307
|
1.3
|
9.7
|
0.8
|
SG
|
A:CYS206
|
1.3
|
8.3
|
0.8
|
HB3
|
A:CYS206
|
2.0
|
7.5
|
0.2
|
SG
|
A:CYS206
|
2.5
|
6.7
|
0.2
|
O
|
A:HOH544
|
2.5
|
15.7
|
1.0
|
CB
|
A:CYS206
|
2.6
|
6.3
|
0.2
|
CB
|
A:CYS206
|
2.8
|
6.9
|
0.8
|
HB3
|
A:CYS206
|
3.1
|
8.3
|
0.8
|
O
|
A:VAL135
|
3.1
|
10.8
|
1.0
|
O
|
A:GLN137
|
3.2
|
7.4
|
1.0
|
CE1
|
A:MBO307
|
3.3
|
10.8
|
0.8
|
HB3
|
A:LEU204
|
3.3
|
9.0
|
1.0
|
HB2
|
A:CYS206
|
3.3
|
7.5
|
0.2
|
HA
|
A:CYS206
|
3.3
|
6.8
|
0.8
|
H
|
A:GLN137
|
3.4
|
9.6
|
0.5
|
H
|
A:GLN137
|
3.4
|
9.6
|
0.5
|
CA
|
A:CYS206
|
3.5
|
5.7
|
0.8
|
CA
|
A:CYS206
|
3.5
|
6.2
|
0.2
|
HA
|
A:VAL135
|
3.5
|
11.2
|
1.0
|
C
|
A:VAL135
|
3.5
|
9.0
|
1.0
|
HB2
|
A:CYS206
|
3.5
|
8.3
|
0.8
|
HA
|
A:CYS206
|
3.6
|
7.4
|
0.2
|
N
|
A:CYS206
|
3.6
|
6.2
|
0.2
|
N
|
A:GLN137
|
3.7
|
8.0
|
1.0
|
N
|
A:CYS206
|
3.7
|
5.9
|
0.8
|
C
|
A:GLU205
|
3.8
|
6.6
|
1.0
|
O
|
A:GLU205
|
3.8
|
8.0
|
1.0
|
HA
|
A:GLN136
|
3.9
|
11.7
|
1.0
|
O
|
A:HOH575
|
3.9
|
13.6
|
1.0
|
C
|
A:GLN137
|
3.9
|
7.4
|
1.0
|
H
|
A:GLU205
|
4.0
|
7.7
|
1.0
|
H
|
A:CYS206
|
4.0
|
7.5
|
0.2
|
CE2
|
A:MBO307
|
4.1
|
11.2
|
0.8
|
C
|
A:GLN136
|
4.1
|
9.1
|
1.0
|
CA
|
A:VAL135
|
4.1
|
9.4
|
1.0
|
N
|
A:GLN136
|
4.1
|
9.0
|
1.0
|
N
|
A:GLU205
|
4.2
|
6.4
|
1.0
|
H
|
A:CYS206
|
4.2
|
7.1
|
0.8
|
CB
|
A:LEU204
|
4.2
|
7.5
|
1.0
|
CA
|
A:GLN136
|
4.2
|
9.7
|
1.0
|
CE6
|
A:MBO307
|
4.3
|
10.9
|
0.8
|
HA
|
A:PRO138
|
4.3
|
10.0
|
0.5
|
HB
|
A:VAL135
|
4.3
|
12.5
|
1.0
|
HA
|
A:PRO138
|
4.3
|
9.9
|
0.6
|
CA
|
A:GLN137
|
4.4
|
7.8
|
1.0
|
HB2
|
A:LEU204
|
4.4
|
9.0
|
1.0
|
HD13
|
A:LEU204
|
4.5
|
13.1
|
1.0
|
C
|
A:LEU204
|
4.6
|
5.8
|
1.0
|
O
|
A:ALA134
|
4.6
|
8.1
|
1.0
|
CA
|
A:GLU205
|
4.6
|
6.5
|
1.0
|
HD22
|
A:LEU204
|
4.6
|
14.3
|
1.0
|
O
|
A:HOH639
|
4.7
|
34.9
|
1.0
|
N
|
A:PRO138
|
4.7
|
7.7
|
0.6
|
N
|
A:PRO138
|
4.7
|
7.8
|
0.5
|
H
|
A:GLN136
|
4.8
|
10.8
|
1.0
|
CB
|
A:VAL135
|
4.8
|
10.4
|
1.0
|
O
|
A:GLN136
|
4.8
|
10.2
|
1.0
|
HA
|
A:GLN137
|
4.9
|
9.3
|
1.0
|
C
|
A:CYS206
|
4.9
|
6.0
|
0.2
|
CA
|
A:LEU204
|
4.9
|
6.5
|
1.0
|
C
|
A:CYS206
|
4.9
|
5.7
|
0.8
|
CA
|
A:PRO138
|
5.0
|
8.3
|
0.6
|
CA
|
A:PRO138
|
5.0
|
8.3
|
0.5
|
|
Mercury binding site 2 out
of 2 in 6gm9
Go back to
Mercury Binding Sites List in 6gm9
Mercury binding site 2 out
of 2 in the Human Carbonic Anhydrase II in Complex with 4-Methylbenzenesulfonamide
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 2 of Human Carbonic Anhydrase II in Complex with 4-Methylbenzenesulfonamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg307
b:9.7
occ:0.84
|
HG
|
A:MBO307
|
0.0
|
9.7
|
0.8
|
HG
|
A:HG302
|
1.3
|
7.6
|
0.2
|
CE1
|
A:MBO307
|
2.1
|
10.8
|
0.8
|
HB3
|
A:CYS206
|
2.2
|
7.5
|
0.2
|
SG
|
A:CYS206
|
2.4
|
8.3
|
0.8
|
O
|
A:GLN137
|
3.0
|
7.4
|
1.0
|
O
|
A:HOH544
|
3.0
|
15.7
|
1.0
|
CE6
|
A:MBO307
|
3.0
|
10.9
|
0.8
|
CB
|
A:CYS206
|
3.0
|
6.3
|
0.2
|
O
|
A:GLU205
|
3.0
|
8.0
|
1.0
|
HA
|
A:CYS206
|
3.1
|
6.8
|
0.8
|
CE2
|
A:MBO307
|
3.1
|
11.2
|
0.8
|
HA
|
A:PRO138
|
3.3
|
10.0
|
0.5
|
HA
|
A:CYS206
|
3.3
|
7.4
|
0.2
|
HA
|
A:PRO138
|
3.3
|
9.9
|
0.6
|
C
|
A:GLN137
|
3.4
|
7.4
|
1.0
|
C
|
A:GLU205
|
3.4
|
6.6
|
1.0
|
CB
|
A:CYS206
|
3.4
|
6.9
|
0.8
|
SG
|
A:CYS206
|
3.5
|
6.7
|
0.2
|
CA
|
A:CYS206
|
3.5
|
6.2
|
0.2
|
CA
|
A:CYS206
|
3.5
|
5.7
|
0.8
|
HB3
|
A:CYS206
|
3.6
|
8.3
|
0.8
|
N
|
A:CYS206
|
3.6
|
6.2
|
0.2
|
N
|
A:CYS206
|
3.7
|
5.9
|
0.8
|
H
|
A:GLN137
|
3.7
|
9.6
|
0.5
|
H
|
A:GLN137
|
3.7
|
9.6
|
0.5
|
O
|
A:HOH575
|
3.8
|
13.6
|
1.0
|
HB2
|
A:CYS206
|
3.8
|
7.5
|
0.2
|
N
|
A:GLN137
|
3.8
|
8.0
|
1.0
|
N
|
A:PRO138
|
3.9
|
7.7
|
0.6
|
N
|
A:PRO138
|
3.9
|
7.8
|
0.5
|
H
|
A:GLU205
|
4.0
|
7.7
|
1.0
|
CA
|
A:PRO138
|
4.0
|
8.3
|
0.5
|
CA
|
A:PRO138
|
4.0
|
8.3
|
0.6
|
CA
|
A:GLN137
|
4.1
|
7.8
|
1.0
|
HB3
|
A:LEU204
|
4.2
|
9.0
|
1.0
|
C
|
A:GLN136
|
4.2
|
9.1
|
1.0
|
N
|
A:GLU205
|
4.2
|
6.4
|
1.0
|
O
|
A:VAL135
|
4.2
|
10.8
|
1.0
|
HB2
|
A:CYS206
|
4.3
|
8.3
|
0.8
|
H
|
A:CYS206
|
4.3
|
7.5
|
0.2
|
CA
|
A:GLU205
|
4.3
|
6.5
|
1.0
|
CE5
|
A:MBO307
|
4.4
|
11.7
|
0.8
|
H
|
A:CYS206
|
4.4
|
7.1
|
0.8
|
HA
|
A:GLN136
|
4.4
|
11.7
|
1.0
|
CE3
|
A:MBO307
|
4.4
|
11.4
|
0.8
|
HA
|
A:GLN137
|
4.5
|
9.3
|
1.0
|
HB2
|
A:GLU205
|
4.5
|
8.1
|
1.0
|
O
|
A:HOH639
|
4.6
|
34.9
|
1.0
|
C
|
A:VAL135
|
4.6
|
9.0
|
1.0
|
HA
|
A:VAL135
|
4.7
|
11.2
|
1.0
|
HD3
|
A:PRO138
|
4.7
|
10.3
|
0.6
|
O
|
A:GLN136
|
4.7
|
10.2
|
1.0
|
CA
|
A:GLN136
|
4.7
|
9.7
|
1.0
|
HB3
|
A:PRO138
|
4.7
|
11.7
|
0.5
|
HD3
|
A:PRO138
|
4.8
|
10.6
|
0.5
|
HG3
|
A:PRO138
|
4.8
|
11.1
|
0.6
|
CD
|
A:PRO138
|
4.8
|
8.6
|
0.6
|
C
|
A:PRO138
|
4.9
|
7.0
|
0.6
|
O
|
A:HOH633
|
4.9
|
29.5
|
1.0
|
CE4
|
A:MBO307
|
4.9
|
11.9
|
0.8
|
N
|
A:GLN136
|
4.9
|
9.0
|
1.0
|
CB
|
A:GLU205
|
4.9
|
6.8
|
1.0
|
C
|
A:LEU204
|
5.0
|
5.8
|
1.0
|
CD
|
A:PRO138
|
5.0
|
8.8
|
0.5
|
C
|
A:CYS206
|
5.0
|
5.7
|
0.8
|
C
|
A:CYS206
|
5.0
|
6.0
|
0.2
|
C
|
A:PRO138
|
5.0
|
7.5
|
0.5
|
|
Reference:
S.Gloeckner,
A.Heine,
G.Klebe.
Human Carbonic Anhydrase II in Complex with 4-Methylbenzenesulfonamide To Be Published.
Page generated: Sun Aug 11 07:19:31 2024
|