Mercury in PDB 6k9c: The Apo Structure of Nrs-1 C Terminal Region (305-718)

The structure of The Apo Structure of Nrs-1 C Terminal Region (305-718), PDB code: 6k9c was solved by X.Chen, J.Gan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.92 / 2.41
Space group	P 21 3
Cell size a, b, c (Å), α, β, γ (°)	161.130, 161.130, 161.130, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 24.1

The binding sites of Mercury atom in the The Apo Structure of Nrs-1 C Terminal Region (305-718) (pdb code 6k9c). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the The Apo Structure of Nrs-1 C Terminal Region (305-718), PDB code: 6k9c:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in the The Apo Structure of Nrs-1 C Terminal Region (305-718)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of The Apo Structure of Nrs-1 C Terminal Region (305-718) within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg801 b:41.1 occ:0.33 SG A:CYS536 2.4 33.7 1.0 O A:LEU485 2.7 28.6 1.0 OD1 A:ASN534 2.8 31.8 1.0 CD1 A:LEU520 3.5 23.1 1.0 CB A:CYS536 3.7 20.4 1.0 C A:LEU485 3.7 20.4 1.0 CG A:ASN534 3.8 25.1 1.0 N A:CYS536 3.9 16.8 1.0 N A:PHE535 4.0 21.1 1.0 CB A:LEU485 4.0 29.6 1.0 CA A:ASN534 4.0 22.2 1.0 CA A:LEU485 4.1 20.8 1.0 CB A:ASN534 4.3 21.3 1.0 CA A:CYS536 4.3 20.8 1.0 O A:LYS488 4.5 24.4 1.0 C A:ASN534 4.5 28.4 1.0 CG A:LEU520 4.8 25.4 1.0 CD1 A:ILE532 4.8 35.0 1.0 N A:LYS488 4.8 24.9 1.0 C A:PHE535 4.8 32.6 1.0 CD2 A:LEU485 4.8 30.7 1.0 O A:LYS533 4.8 34.9 1.0 ND2 A:ASN534 4.9 31.6 1.0 N A:TYR486 4.9 34.3 1.0 CA A:PHE535 4.9 26.7 1.0 CB A:LYS488 5.0 28.3 1.0 CG A:LEU485 5.0 31.2 1.0 N A:ASN487 5.0 28.7 1.0

Mercury binding site 2 out of 2 in the The Apo Structure of Nrs-1 C Terminal Region (305-718)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of The Apo Structure of Nrs-1 C Terminal Region (305-718) within 5.0Å range: probe atom residue distance (Å) B Occ B:Hg801 b:69.1 occ:0.36 SG B:CYS536 2.5 53.7 1.0 O B:LEU485 2.7 60.6 1.0 ND2 B:ASN534 2.8 56.3 1.0 CD1 B:LEU520 3.3 46.6 1.0 CB B:CYS536 3.7 44.4 1.0 C B:LEU485 3.8 51.0 1.0 N B:CYS536 3.9 32.2 1.0 CG B:ASN534 4.0 37.5 1.0 N B:PHE535 4.0 40.3 1.0 CA B:ASN534 4.1 35.5 1.0 CB B:LEU485 4.1 33.1 1.0 CA B:LEU485 4.2 46.4 1.0 CA B:CYS536 4.3 37.7 1.0 O B:LYS488 4.3 53.5 1.0 CB B:ASN534 4.4 30.5 1.0 C B:ASN534 4.6 43.5 1.0 CG B:LEU520 4.6 42.6 1.0 CD1 B:ILE532 4.6 51.4 1.0 N B:LYS488 4.7 44.5 1.0 O B:LYS533 4.8 42.9 1.0 C B:PHE535 4.8 38.1 1.0 CD2 B:LEU485 4.9 32.8 1.0 N B:TYR486 4.9 43.1 1.0 N B:ASN487 4.9 48.4 1.0 OD1 B:ASN534 4.9 49.6 1.0 CA B:PHE535 4.9 35.9 1.0 CB B:LYS488 4.9 34.0 1.0

X.Chen, S.Su, Y.Chen, Y.Gao, Y.Li, Z.Shao, Y.Zhang, Q.Shao, H.Liu, J.Li, J.Ma, J.Gan. Structural Studies Reveal A Ring-Shaped Architecture of Deep-Sea Vent Phage Nrs-1 Polymerase. Nucleic Acids Res. 2020.
ISSN: ESSN 1362-4962
PubMed: 32016421
DOI: 10.1093/NAR/GKAA071