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Mercury in PDB 6lnh: Crystal Structure of Ido From Bacillus Thuringiensis

Enzymatic activity of Crystal Structure of Ido From Bacillus Thuringiensis

All present enzymatic activity of Crystal Structure of Ido From Bacillus Thuringiensis:
1.14.11.45;

Protein crystallography data

The structure of Crystal Structure of Ido From Bacillus Thuringiensis, PDB code: 6lnh was solved by Y.Feng, J.W.Huang, W.D.Liu, C.C.Chen, R.T.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.86 / 2.34
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 68.425, 120.965, 81.715, 90, 108.11, 90
R / Rfree (%) 22.8 / 26.4

Other elements in 6lnh:

The structure of Crystal Structure of Ido From Bacillus Thuringiensis also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Ido From Bacillus Thuringiensis (pdb code 6lnh). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 7 binding sites of Mercury where determined in the Crystal Structure of Ido From Bacillus Thuringiensis, PDB code: 6lnh:
Jump to Mercury binding site number: 1; 2; 3; 4; 5; 6; 7;

Mercury binding site 1 out of 7 in 6lnh

Go back to Mercury Binding Sites List in 6lnh
Mercury binding site 1 out of 7 in the Crystal Structure of Ido From Bacillus Thuringiensis


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Ido From Bacillus Thuringiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg301

b:167.1
occ:1.00
 CB A:CYS67 2.8 63.7 1.0
SG A:CYS67 2.9 89.8 1.0
CZ A:PHE163 3.6 51.5 1.0
CA A:CYS67 3.9 63.8 1.0
NH1 A:ARG68 4.0 73.1 1.0
CE1 A:PHE163 4.0 49.9 1.0
CE2 A:PHE163 4.0 54.6 1.0
N A:CYS67 4.1 73.7 1.0
N A:GLY65 4.3 96.5 1.0
CA A:GLY65 4.7 97.4 1.0
CD1 A:PHE163 4.8 52.5 1.0
CD2 A:PHE163 4.8 52.0 1.0

Mercury binding site 2 out of 7 in 6lnh

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Mercury binding site 2 out of 7 in the Crystal Structure of Ido From Bacillus Thuringiensis


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of Ido From Bacillus Thuringiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg302

b:85.0
occ:1.00
 SG C:CYS232 2.5 57.1 1.0
OE1 A:GLU210 2.7 73.8 1.0
CD A:GLU210 3.2 63.5 1.0
O C:GLU231 3.4 49.9 1.0
CB C:CYS232 3.6 48.0 1.0
CA C:CYS232 3.7 49.8 1.0
C C:GLU231 3.8 50.6 1.0
CG A:GLU210 3.8 59.5 1.0
OE2 A:GLU210 3.9 72.5 1.0
N C:CYS232 4.0 50.2 1.0
O C:HOH429 4.1 44.2 1.0
CB C:GLU231 4.6 53.9 1.0
CA C:GLU231 4.8 52.5 1.0
CD A:LYS209 4.9 58.6 1.0
O C:HOH407 4.9 60.6 1.0

Mercury binding site 3 out of 7 in 6lnh

Go back to Mercury Binding Sites List in 6lnh
Mercury binding site 3 out of 7 in the Crystal Structure of Ido From Bacillus Thuringiensis


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of Ido From Bacillus Thuringiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg303

b:141.8
occ:1.00
 OE1 C:GLU210 2.6 30.0 1.0
SG A:CYS232 2.8 70.2 1.0
O A:GLU231 3.2 63.6 1.0
O C:HOH427 3.6 56.3 1.0
C A:GLU231 3.7 62.0 1.0
CA A:CYS232 3.7 59.5 1.0
CB A:CYS232 3.7 59.6 1.0
CD C:GLU210 3.9 30.0 1.0
N A:CYS232 3.9 53.9 1.0
CD C:LYS209 4.2 65.7 1.0
NZ C:LYS209 4.4 84.0 1.0
CB A:GLU231 4.4 71.4 1.0
CE C:LYS209 4.5 67.2 1.0
CA A:GLU231 4.7 67.7 1.0
OE2 C:GLU210 4.7 30.0 1.0
CG C:GLU210 4.7 30.0 1.0

Mercury binding site 4 out of 7 in 6lnh

Go back to Mercury Binding Sites List in 6lnh
Mercury binding site 4 out of 7 in the Crystal Structure of Ido From Bacillus Thuringiensis


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Crystal Structure of Ido From Bacillus Thuringiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg301

b:86.6
occ:1.00
 O B:GLU231 2.3 75.6 1.0
SG B:CYS232 2.3 57.1 1.0
OE1 D:GLU210 2.3 61.4 1.0
C B:GLU231 3.2 51.6 1.0
CB B:CYS232 3.4 50.9 1.0
CA B:CYS232 3.4 51.4 1.0
CD D:GLU210 3.5 52.6 1.0
N B:CYS232 3.6 48.1 1.0
O B:HOH424 3.9 53.7 1.0
OE2 D:GLU210 4.0 53.4 1.0
NZ D:LYS209 4.3 65.0 1.0
CD D:LYS209 4.3 61.6 1.0
CA B:GLU231 4.4 54.6 1.0
CB B:GLU231 4.6 55.6 1.0
CG D:GLU210 4.7 52.9 1.0
CG D:LYS209 4.8 60.6 1.0
CE D:LYS209 4.8 71.4 1.0
C B:CYS232 4.8 53.2 1.0
CB D:GLU210 5.0 52.8 1.0

Mercury binding site 5 out of 7 in 6lnh

Go back to Mercury Binding Sites List in 6lnh
Mercury binding site 5 out of 7 in the Crystal Structure of Ido From Bacillus Thuringiensis


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Crystal Structure of Ido From Bacillus Thuringiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg302

b:224.5
occ:1.00
 SG B:CYS67 2.4 118.8 1.0
NH2 B:ARG68 2.4 92.8 1.0
CB B:CYS67 3.3 58.2 1.0
OE1 B:GLU66 3.3 128.0 1.0
O B:PHE163 3.4 73.0 1.0
CE2 B:PHE163 3.7 64.1 1.0
CZ B:ARG68 3.7 89.4 1.0
CZ B:PHE163 3.7 61.1 1.0
OE2 B:GLU66 3.8 122.2 1.0
CD B:GLU66 3.8 123.1 1.0
CD2 B:PHE163 4.0 62.6 1.0
CE1 B:PHE163 4.1 56.0 1.0
CG B:PHE163 4.3 58.0 1.0
CD1 B:PHE163 4.3 52.8 1.0
C B:PHE163 4.4 67.2 1.0
NE B:ARG68 4.5 79.5 1.0
NH1 B:ARG68 4.5 87.0 1.0
CA B:CYS67 4.5 75.5 1.0
N B:CYS67 4.5 97.2 1.0
N B:PHE163 4.7 58.9 1.0
CA B:PHE163 5.0 61.8 1.0

Mercury binding site 6 out of 7 in 6lnh

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Mercury binding site 6 out of 7 in the Crystal Structure of Ido From Bacillus Thuringiensis


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 6 of Crystal Structure of Ido From Bacillus Thuringiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg303

b:291.6
occ:1.00
 SG B:CYS118 1.9 93.0 1.0
OD1 B:ASP114 3.2 91.6 1.0
CB B:CYS118 3.4 65.5 1.0
N B:CYS118 3.4 58.2 1.0
CA B:CYS118 3.7 61.8 1.0
O B:ASP114 3.7 62.0 1.0
C B:LEU117 3.9 55.4 1.0
CB B:LEU117 3.9 54.4 1.0
CG B:ASP114 4.3 79.3 1.0
O B:LEU117 4.4 56.8 1.0
C B:ASP114 4.4 58.2 1.0
CA B:LEU117 4.4 52.2 1.0
CA B:ASP114 4.4 58.3 1.0
CB B:ASP114 4.5 69.2 1.0
N B:LEU117 5.0 54.0 1.0
NE2 B:GLN123 5.0 60.7 1.0

Mercury binding site 7 out of 7 in 6lnh

Go back to Mercury Binding Sites List in 6lnh
Mercury binding site 7 out of 7 in the Crystal Structure of Ido From Bacillus Thuringiensis


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 7 of Crystal Structure of Ido From Bacillus Thuringiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Hg301

b:87.8
occ:1.00
 SG D:CYS232 2.4 47.8 1.0
OE2 B:GLU210 2.8 64.4 1.0
O D:GLU231 3.0 48.0 1.0
C D:GLU231 3.3 45.0 1.0
O D:HOH418 3.4 45.2 1.0
CB D:CYS232 3.5 42.3 1.0
CA D:CYS232 3.5 41.9 1.0
N D:CYS232 3.5 41.7 1.0
CD B:GLU210 3.8 47.9 1.0
CB D:GLU231 3.9 52.8 1.0
CA D:GLU231 4.1 53.7 1.0
CG B:GLU210 4.3 48.4 1.0
N D:GLU231 4.7 46.6 1.0
OE1 B:GLU210 4.8 41.7 1.0
C D:CYS232 5.0 43.4 1.0

Reference:

Y.Feng, J.W.Huang, W.D.Liu, C.C.Chen, R.T.Guo. Crystal Structure of Ido From Bacillus Thuringiensis To Be Published.
Page generated: Sun Jan 24 17:20:50 2021

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