Atomistry » Mercury » PDB 6bzi-6rjj » 6nwh
Atomistry »
  Mercury »
    PDB 6bzi-6rjj »
      6nwh »

Mercury in PDB 6nwh: Structures of the Transcriptional Regulator Bgar, A Lactose Sensor.

Protein crystallography data

The structure of Structures of the Transcriptional Regulator Bgar, A Lactose Sensor., PDB code: 6nwh was solved by T.S.Peat, J.Newman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.21 / 2.03
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.168, 86.568, 119.812, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 20.6

Other elements in 6nwh:

The structure of Structures of the Transcriptional Regulator Bgar, A Lactose Sensor. also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Mercury Binding Sites:

The binding sites of Mercury atom in the Structures of the Transcriptional Regulator Bgar, A Lactose Sensor. (pdb code 6nwh). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 9 binding sites of Mercury where determined in the Structures of the Transcriptional Regulator Bgar, A Lactose Sensor., PDB code: 6nwh:
Jump to Mercury binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Mercury binding site 1 out of 9 in 6nwh

Go back to Mercury Binding Sites List in 6nwh
Mercury binding site 1 out of 9 in the Structures of the Transcriptional Regulator Bgar, A Lactose Sensor.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Structures of the Transcriptional Regulator Bgar, A Lactose Sensor. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg202

b:42.2
occ:0.50
O A:HOH327 1.8 27.9 1.0
SG A:CYS109 2.6 28.5 1.0
O A:HOH398 2.9 24.4 1.0
O A:ASN107 3.2 27.4 1.0
CB A:CYS109 3.4 23.2 1.0
C A:SER108 3.4 21.5 1.0
O A:SER108 3.5 22.6 1.0
CE2 A:PHE53 3.6 24.6 1.0
N A:CYS109 3.7 20.5 1.0
C A:ASN107 3.9 26.0 1.0
CD2 A:PHE53 3.9 23.0 1.0
O A:THR106 3.9 26.1 1.0
CA A:SER108 4.0 23.4 1.0
CA A:CYS109 4.2 20.9 1.0
N A:SER108 4.2 24.8 1.0
CE A:MET72 4.5 17.6 1.0
CZ A:PHE53 4.6 24.1 1.0
C A:THR106 4.6 26.8 1.0
O A:HOH304 4.7 25.4 1.0
SD A:MET72 4.9 16.8 1.0
CA A:ASN107 4.9 26.2 1.0

Mercury binding site 2 out of 9 in 6nwh

Go back to Mercury Binding Sites List in 6nwh
Mercury binding site 2 out of 9 in the Structures of the Transcriptional Regulator Bgar, A Lactose Sensor.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Structures of the Transcriptional Regulator Bgar, A Lactose Sensor. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg203

b:31.1
occ:0.50
SG A:CYS20 2.5 28.2 1.0
SG A:CYS127 2.7 39.2 1.0
CD2 A:LEU4 2.8 30.6 1.0
HG A:HG206 3.0 47.7 0.4
OG A:SER130 3.1 20.6 0.5
CB A:CYS20 3.2 20.5 1.0
CA A:CYS127 3.3 26.0 1.0
CB A:CYS127 3.3 29.1 1.0
N A:GLY21 3.5 15.4 1.0
C A:CYS20 3.7 17.1 1.0
CB A:SER130 3.7 22.1 0.5
CB A:SER130 3.8 23.7 0.5
O A:CYS127 3.9 26.8 1.0
OG A:SER130 4.0 23.4 0.5
CA A:CYS20 4.1 17.9 1.0
C A:CYS127 4.1 24.5 1.0
CA A:GLY21 4.2 15.2 1.0
CG A:LEU4 4.2 30.9 1.0
O A:CYS20 4.2 15.9 1.0
N A:CYS127 4.4 25.3 1.0
C A:GLY21 4.4 14.2 1.0
CD1 A:LEU4 4.5 34.2 1.0
O A:GLY21 4.5 12.8 1.0
HG A:HG205 4.9 72.9 0.3
CG1 A:ILE22 4.9 17.0 1.0
O A:MET126 4.9 21.1 1.0
O A:TRP88 5.0 12.0 1.0

Mercury binding site 3 out of 9 in 6nwh

Go back to Mercury Binding Sites List in 6nwh
Mercury binding site 3 out of 9 in the Structures of the Transcriptional Regulator Bgar, A Lactose Sensor.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Structures of the Transcriptional Regulator Bgar, A Lactose Sensor. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg204

b:39.0
occ:0.40
O A:HOH390 1.9 23.3 1.0
O A:CYS113 2.9 29.2 1.0
SG A:CYS113 3.0 39.1 1.0
CB A:CYS113 3.2 34.7 1.0
C A:CYS113 3.2 32.4 1.0
O A:GLU114 3.2 34.4 1.0
O A:GLY63 3.4 22.8 1.0
CA A:CYS113 3.5 30.8 1.0
OH A:TYR43 3.6 31.3 1.0
CA A:GLY63 3.7 21.6 1.0
N A:CYS113 3.9 25.4 1.0
CE1 A:TYR43 4.0 24.4 1.0
C A:GLY63 4.0 21.2 1.0
CG A:PRO120 4.0 26.4 1.0
C A:GLU114 4.0 43.0 1.0
N A:GLU114 4.1 35.9 1.0
CZ A:TYR43 4.3 24.9 1.0
CB A:SER117 4.5 32.4 1.0
CD A:PRO120 4.6 26.2 1.0
CA A:GLU114 4.7 41.3 1.0
N A:GLU115 4.8 44.6 1.0
N A:GLY63 5.0 20.8 1.0
CA A:GLU115 5.0 49.8 1.0

Mercury binding site 4 out of 9 in 6nwh

Go back to Mercury Binding Sites List in 6nwh
Mercury binding site 4 out of 9 in the Structures of the Transcriptional Regulator Bgar, A Lactose Sensor.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Structures of the Transcriptional Regulator Bgar, A Lactose Sensor. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg205

b:72.9
occ:0.30
OG A:SER130 2.8 23.4 0.5
CB A:CYS20 3.3 20.5 1.0
SG A:CYS20 3.3 28.2 1.0
O A:MET126 3.5 21.1 1.0
CD1 A:ILE89 3.7 20.3 1.0
CB A:MET126 3.8 20.2 1.0
CD2 A:LEU143 3.8 23.9 1.0
C A:MET126 3.9 22.2 1.0
CG1 A:VAL17 4.0 17.2 1.0
OH A:TYR8 4.0 23.0 1.0
CE2 A:TYR8 4.0 20.3 1.0
CB A:SER130 4.2 23.7 0.5
CE A:MET126 4.3 21.4 1.0
CB A:SER130 4.3 22.1 0.5
CA A:MET126 4.4 20.8 1.0
CD1 A:LEU143 4.4 24.1 1.0
CZ A:TYR8 4.4 20.9 1.0
N A:CYS127 4.5 25.3 1.0
O A:GLU19 4.5 13.4 1.0
CA A:CYS20 4.6 17.9 1.0
N A:CYS20 4.7 16.2 1.0
CG A:LEU143 4.8 22.8 1.0
CG A:MET126 4.8 20.9 1.0
CG2 A:ILE89 4.8 16.0 1.0
C A:GLU19 4.8 15.8 1.0
HG A:HG203 4.9 31.1 0.5
HG A:HG206 4.9 47.7 0.4
CA A:CYS127 4.9 26.0 1.0

Mercury binding site 5 out of 9 in 6nwh

Go back to Mercury Binding Sites List in 6nwh
Mercury binding site 5 out of 9 in the Structures of the Transcriptional Regulator Bgar, A Lactose Sensor.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Structures of the Transcriptional Regulator Bgar, A Lactose Sensor. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg206

b:47.7
occ:0.40
HG A:HG203 3.0 31.1 0.5
O A:TRP88 3.1 12.0 1.0
CB A:CYS127 3.1 29.1 1.0
CD1 A:ILE89 3.2 20.3 1.0
CB A:CYS20 3.4 20.5 1.0
CA A:CYS127 3.6 26.0 1.0
SG A:CYS127 3.6 39.2 1.0
O A:GLY21 3.7 12.8 1.0
N A:GLY21 3.8 15.4 1.0
N A:CYS127 3.9 25.3 1.0
O A:ILE123 3.9 22.2 1.0
C A:TRP88 4.1 12.9 1.0
SG A:CYS20 4.2 28.2 1.0
N A:TRP88 4.2 13.3 1.0
CD2 A:TYR87 4.3 23.1 1.0
CG1 A:ILE89 4.3 19.3 1.0
CA A:CYS20 4.3 17.9 1.0
CG2 A:ILE123 4.4 20.9 1.0
CB A:TYR87 4.5 17.1 1.0
C A:CYS20 4.5 17.1 1.0
C A:GLY21 4.5 14.2 1.0
C A:MET126 4.8 22.2 1.0
CA A:GLY21 4.8 15.2 1.0
CA A:TRP88 4.8 13.0 1.0
CG A:TYR87 4.8 20.1 1.0
C A:ILE123 4.9 20.6 1.0
HG A:HG205 4.9 72.9 0.3
C A:TYR87 4.9 14.1 1.0
N A:ILE89 4.9 13.2 1.0
CA A:TYR87 5.0 15.0 1.0

Mercury binding site 6 out of 9 in 6nwh

Go back to Mercury Binding Sites List in 6nwh
Mercury binding site 6 out of 9 in the Structures of the Transcriptional Regulator Bgar, A Lactose Sensor.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 6 of Structures of the Transcriptional Regulator Bgar, A Lactose Sensor. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg202

b:21.8
occ:0.50
SG B:CYS127 2.1 25.5 1.0
SG B:CYS20 2.3 31.5 0.7
SG B:CYS20 2.5 21.6 0.3
CB B:CYS20 3.1 22.5 0.7
CB B:CYS20 3.1 18.6 0.3
O B:TRP88 3.1 13.1 1.0
CB B:CYS127 3.2 22.2 1.0
CA B:CYS127 3.2 21.4 1.0
N B:CYS127 3.3 19.7 1.0
CA B:CYS20 3.7 17.7 0.3
CA B:CYS20 3.7 19.6 0.7
N B:GLY21 3.8 16.8 1.0
O B:ILE123 3.8 18.3 1.0
C B:MET126 4.0 19.9 1.0
C B:CYS20 4.1 17.3 0.3
C B:CYS20 4.1 18.3 0.7
O B:GLY21 4.2 13.6 1.0
C B:TRP88 4.2 14.3 1.0
CB B:MET126 4.4 19.2 1.0
O B:MET126 4.4 18.0 1.0
HG B:HG205 4.6 72.2 0.5
CD2 B:LEU4 4.7 22.1 1.0
CG2 B:ILE123 4.7 17.8 1.0
C B:CYS127 4.7 20.7 1.0
N B:TRP88 4.7 13.8 1.0
CB B:ILE89 4.7 18.1 1.0
C B:GLY21 4.8 15.4 1.0
CA B:MET126 4.8 19.2 1.0
CA B:GLY21 4.8 16.4 1.0
OG B:SER130 4.9 22.9 1.0
C B:ILE123 4.9 19.0 1.0
N B:ILE89 4.9 14.7 1.0
CA B:ILE89 4.9 15.3 1.0

Mercury binding site 7 out of 9 in 6nwh

Go back to Mercury Binding Sites List in 6nwh
Mercury binding site 7 out of 9 in the Structures of the Transcriptional Regulator Bgar, A Lactose Sensor.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 7 of Structures of the Transcriptional Regulator Bgar, A Lactose Sensor. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg203

b:26.9
occ:0.40
O B:HOH400 1.9 19.1 1.0
SG B:CYS109 2.4 28.6 1.0
O B:THR106 2.9 22.0 1.0
O B:ASN107 3.2 21.4 1.0
SD B:MET72 3.3 19.3 1.0
CB B:CYS109 3.5 22.1 1.0
CE2 B:PHE53 3.6 32.4 1.0
C B:THR106 3.7 22.2 1.0
C B:ASN107 3.8 21.7 1.0
CE B:MET72 3.8 17.5 1.0
CZ B:PHE53 3.8 34.4 1.0
CA B:ASN107 4.0 23.2 1.0
CD1 B:LEU69 4.0 19.5 1.0
N B:ASN107 4.3 22.5 1.0
CG B:MET72 4.3 18.0 1.0
N B:CYS109 4.5 19.0 1.0
CA B:CYS109 4.5 20.5 1.0
CD2 B:PHE53 4.6 31.1 1.0
N B:SER108 4.7 19.3 1.0
CG B:LEU69 4.7 17.7 1.0
C B:SER108 4.7 18.1 1.0
CA B:THR106 4.8 21.7 1.0
CE1 B:PHE53 4.9 32.5 1.0

Mercury binding site 8 out of 9 in 6nwh

Go back to Mercury Binding Sites List in 6nwh
Mercury binding site 8 out of 9 in the Structures of the Transcriptional Regulator Bgar, A Lactose Sensor.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 8 of Structures of the Transcriptional Regulator Bgar, A Lactose Sensor. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg204

b:48.5
occ:0.40
O B:HOH376 2.2 40.1 1.0
O B:CYS113 2.8 40.0 1.0
SG B:CYS113 2.9 47.0 1.0
CB B:CYS113 3.0 40.6 1.0
O B:GLU114 3.1 42.0 1.0
C B:CYS113 3.3 39.2 1.0
O B:GLY63 3.3 19.6 1.0
CA B:CYS113 3.5 37.7 1.0
N B:CYS113 3.7 31.0 1.0
CA B:GLY63 3.8 19.0 1.0
C B:GLU114 4.0 50.1 1.0
OH B:TYR43 4.0 29.1 1.0
C B:GLY63 4.0 18.3 1.0
CE1 B:TYR43 4.2 23.0 1.0
N B:GLU114 4.2 44.5 1.0
CG B:PRO120 4.3 28.7 1.0
CB B:SER117 4.5 42.1 1.0
CZ B:TYR43 4.6 23.4 1.0
CD B:PRO120 4.7 28.9 1.0
CA B:GLU114 4.8 50.4 1.0
N B:GLU115 4.8 52.4 1.0
CA B:GLU115 4.8 59.2 1.0
C B:ASN112 4.9 30.6 1.0

Mercury binding site 9 out of 9 in 6nwh

Go back to Mercury Binding Sites List in 6nwh
Mercury binding site 9 out of 9 in the Structures of the Transcriptional Regulator Bgar, A Lactose Sensor.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 9 of Structures of the Transcriptional Regulator Bgar, A Lactose Sensor. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg205

b:72.2
occ:0.50
SG B:CYS20 2.5 31.5 0.7
OG B:SER130 3.0 22.9 1.0
CB B:CYS20 3.1 18.6 0.3
CB B:CYS20 3.2 22.5 0.7
CG1 B:VAL17 3.4 15.1 1.0
CD2 B:LEU143 3.5 21.0 1.0
CE2 B:TYR8 3.6 19.6 1.0
O B:MET126 4.0 18.0 1.0
OH B:TYR8 4.0 19.8 1.0
CB B:MET126 4.1 19.2 1.0
CE B:MET126 4.1 20.0 1.0
CZ B:TYR8 4.2 19.3 1.0
CA B:CYS20 4.2 17.7 0.3
CD1 B:LEU143 4.2 21.6 1.0
SG B:CYS20 4.2 21.6 0.3
CA B:CYS20 4.2 19.6 0.7
O B:GLU19 4.2 16.1 1.0
N B:CYS20 4.4 16.8 0.3
CB B:SER130 4.4 21.9 1.0
C B:MET126 4.4 19.9 1.0
N B:CYS20 4.4 17.0 0.7
CG B:LEU143 4.4 20.7 1.0
CG1 B:ILE89 4.4 20.8 1.0
C B:GLU19 4.4 16.9 1.0
CD2 B:TYR8 4.6 18.9 1.0
HG B:HG202 4.6 21.8 0.5
CA B:MET126 4.7 19.2 1.0
CB B:VAL17 4.7 14.7 1.0
CG B:MET126 5.0 19.4 1.0

Reference:

J.Newman, K.Caron, T.Nebl, T.S.Peat. Structures of the Transcriptional Regulator Bgar, A Lactose Sensor. Acta Crystallogr D Struct V. 75 639 2019BIOL.
ISSN: ISSN 2059-7983
PubMed: 31282473
DOI: 10.1107/S2059798319008131
Page generated: Sun Dec 13 19:15:26 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy