Mercury in PDB 6sg0: Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide
Enzymatic activity of Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide
All present enzymatic activity of Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide:
4.2.1.1;
Protein crystallography data
The structure of Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide, PDB code: 6sg0
was solved by
S.Gloeckner,
A.Heine,
G.Klebe,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
40.03 /
1.13
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
42.397,
41.752,
72.211,
90.00,
104.45,
90.00
|
R / Rfree (%)
|
12.6 /
14.5
|
Other elements in 6sg0:
The structure of Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide also contains other interesting chemical elements:
Mercury Binding Sites:
The binding sites of Mercury atom in the Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide
(pdb code 6sg0). This binding sites where shown within
5.0 Angstroms radius around Mercury atom.
In total 3 binding sites of Mercury where determined in the
Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide, PDB code: 6sg0:
Jump to Mercury binding site number:
1;
2;
3;
Mercury binding site 1 out
of 3 in 6sg0
Go back to
Mercury Binding Sites List in 6sg0
Mercury binding site 1 out
of 3 in the Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 1 of Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg303
b:11.5
occ:0.37
|
HG
|
A:BE7305
|
1.1
|
8.9
|
0.5
|
SG
|
A:CYS206
|
1.5
|
8.7
|
0.6
|
HB3
|
A:CYS206
|
2.1
|
15.3
|
0.4
|
SG
|
A:CYS206
|
2.5
|
11.0
|
0.4
|
O
|
A:HOH520
|
2.5
|
24.2
|
1.0
|
CB
|
A:CYS206
|
2.6
|
12.7
|
0.4
|
CB
|
A:CYS206
|
2.9
|
7.4
|
0.6
|
O
|
A:GLN137
|
3.0
|
7.9
|
0.6
|
HB3
|
A:CYS206
|
3.1
|
8.8
|
0.6
|
O
|
A:VAL135
|
3.2
|
12.9
|
1.0
|
H
|
A:GLN137
|
3.2
|
11.8
|
0.6
|
H
|
A:GLN137
|
3.2
|
12.6
|
0.4
|
HA
|
A:CYS206
|
3.2
|
7.9
|
0.6
|
C5
|
A:BE7305
|
3.3
|
9.4
|
0.5
|
O
|
A:GLN137
|
3.3
|
9.5
|
0.4
|
HB3
|
A:LEU204
|
3.4
|
12.2
|
1.0
|
HB2
|
A:CYS206
|
3.4
|
15.3
|
0.4
|
CA
|
A:CYS206
|
3.5
|
6.6
|
0.6
|
CA
|
A:CYS206
|
3.5
|
11.2
|
0.4
|
HA
|
A:CYS206
|
3.5
|
13.5
|
0.4
|
N
|
A:GLN137
|
3.6
|
9.8
|
0.6
|
C
|
A:VAL135
|
3.6
|
10.7
|
1.0
|
N
|
A:GLN137
|
3.6
|
10.5
|
0.4
|
N
|
A:CYS206
|
3.6
|
10.3
|
0.4
|
HA
|
A:VAL135
|
3.6
|
12.9
|
1.0
|
HB2
|
A:CYS206
|
3.7
|
8.8
|
0.6
|
N
|
A:CYS206
|
3.7
|
7.3
|
0.6
|
C
|
A:GLU205
|
3.7
|
8.8
|
1.0
|
C
|
A:GLN137
|
3.7
|
8.7
|
0.6
|
O
|
A:GLU205
|
3.7
|
10.7
|
1.0
|
C
|
A:GLN137
|
3.8
|
10.0
|
0.4
|
HA
|
A:GLN136
|
3.8
|
13.5
|
1.0
|
O
|
A:HOH540
|
3.9
|
19.9
|
1.0
|
H
|
A:GLU205
|
3.9
|
10.3
|
1.0
|
C6
|
A:BE7305
|
4.0
|
10.6
|
0.5
|
C
|
A:GLN136
|
4.0
|
10.7
|
1.0
|
H
|
A:CYS206
|
4.0
|
12.4
|
0.4
|
N
|
A:GLU205
|
4.1
|
8.6
|
1.0
|
N
|
A:GLN136
|
4.1
|
10.7
|
1.0
|
HA
|
A:PRO138
|
4.2
|
12.1
|
1.0
|
CA
|
A:VAL135
|
4.2
|
10.8
|
1.0
|
CA
|
A:GLN136
|
4.2
|
11.3
|
1.0
|
H
|
A:CYS206
|
4.2
|
8.8
|
0.6
|
C4
|
A:BE7305
|
4.2
|
10.7
|
0.5
|
CA
|
A:GLN137
|
4.3
|
8.7
|
0.6
|
CB
|
A:LEU204
|
4.3
|
10.2
|
1.0
|
CA
|
A:GLN137
|
4.3
|
9.9
|
0.4
|
HB
|
A:VAL135
|
4.5
|
13.7
|
1.0
|
HB2
|
A:LEU204
|
4.5
|
12.2
|
1.0
|
CA
|
A:GLU205
|
4.5
|
9.1
|
1.0
|
HD13
|
A:LEU204
|
4.5
|
17.2
|
1.0
|
C
|
A:LEU204
|
4.6
|
8.4
|
1.0
|
N
|
A:PRO138
|
4.6
|
9.7
|
1.0
|
O
|
A:ALA134
|
4.6
|
10.0
|
1.0
|
HA
|
A:GLN137
|
4.7
|
10.4
|
0.6
|
HA
|
A:GLN137
|
4.7
|
11.9
|
0.4
|
H
|
A:GLN136
|
4.8
|
12.8
|
1.0
|
HD22
|
A:LEU204
|
4.8
|
19.2
|
1.0
|
CA
|
A:PRO138
|
4.8
|
10.1
|
1.0
|
O
|
A:GLN136
|
4.8
|
11.8
|
1.0
|
C
|
A:CYS206
|
4.9
|
9.8
|
0.4
|
C
|
A:CYS206
|
4.9
|
7.3
|
0.6
|
CB
|
A:VAL135
|
4.9
|
11.4
|
1.0
|
CA
|
A:LEU204
|
4.9
|
8.5
|
1.0
|
|
Mercury binding site 2 out
of 3 in 6sg0
Go back to
Mercury Binding Sites List in 6sg0
Mercury binding site 2 out
of 3 in the Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 2 of Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg304
b:22.2
occ:0.12
|
ND1
|
A:HIS64
|
2.3
|
12.9
|
1.0
|
O
|
A:ASN62
|
3.0
|
12.7
|
1.0
|
HB3
|
A:HIS64
|
3.0
|
14.7
|
1.0
|
CE1
|
A:HIS64
|
3.2
|
13.7
|
1.0
|
O
|
A:HOH507
|
3.2
|
34.7
|
1.0
|
CG
|
A:HIS64
|
3.3
|
12.1
|
1.0
|
HE1
|
A:HIS64
|
3.3
|
16.4
|
1.0
|
H
|
A:HIS64
|
3.5
|
11.5
|
1.0
|
N
|
A:HIS64
|
3.5
|
9.6
|
1.0
|
CB
|
A:HIS64
|
3.6
|
12.2
|
1.0
|
HA3
|
A:GLY63
|
3.6
|
13.7
|
1.0
|
C
|
A:GLY63
|
3.7
|
10.4
|
1.0
|
HZ2
|
A:TRP5
|
3.9
|
17.1
|
1.0
|
C
|
A:ASN62
|
3.9
|
11.0
|
1.0
|
CA
|
A:GLY63
|
4.1
|
11.4
|
1.0
|
CZ2
|
A:TRP5
|
4.1
|
14.2
|
1.0
|
CA
|
A:HIS64
|
4.1
|
10.9
|
1.0
|
OD1
|
A:ASN62
|
4.1
|
10.4
|
1.0
|
O
|
A:GLY63
|
4.2
|
11.5
|
1.0
|
NE2
|
A:HIS64
|
4.3
|
14.6
|
1.0
|
CD2
|
A:HIS64
|
4.4
|
13.3
|
1.0
|
HB2
|
A:ASN62
|
4.4
|
14.1
|
1.0
|
HB2
|
A:HIS64
|
4.4
|
14.7
|
1.0
|
N
|
A:GLY63
|
4.4
|
10.6
|
1.0
|
CH2
|
A:TRP5
|
4.5
|
14.4
|
1.0
|
HH2
|
A:TRP5
|
4.5
|
17.3
|
1.0
|
HA
|
A:HIS64
|
4.6
|
13.1
|
1.0
|
CG
|
A:ASN62
|
4.7
|
11.6
|
1.0
|
CE2
|
A:TRP5
|
4.7
|
14.1
|
1.0
|
CB
|
A:ASN62
|
4.9
|
11.7
|
1.0
|
O
|
A:HOH530
|
4.9
|
19.9
|
1.0
|
HA2
|
A:GLY63
|
5.0
|
13.7
|
1.0
|
|
Mercury binding site 3 out
of 3 in 6sg0
Go back to
Mercury Binding Sites List in 6sg0
Mercury binding site 3 out
of 3 in the Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 3 of Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg305
b:8.9
occ:0.49
|
HG
|
A:BE7305
|
0.0
|
8.9
|
0.5
|
HG
|
A:HG303
|
1.1
|
11.5
|
0.4
|
C5
|
A:BE7305
|
2.2
|
9.4
|
0.5
|
HB3
|
A:CYS206
|
2.4
|
15.3
|
0.4
|
SG
|
A:CYS206
|
2.5
|
8.7
|
0.6
|
O
|
A:GLN137
|
2.9
|
7.9
|
0.6
|
O
|
A:HOH520
|
2.9
|
24.2
|
1.0
|
HA
|
A:CYS206
|
3.0
|
7.9
|
0.6
|
O
|
A:GLU205
|
3.0
|
10.7
|
1.0
|
CB
|
A:CYS206
|
3.1
|
12.7
|
0.4
|
C4
|
A:BE7305
|
3.1
|
10.7
|
0.5
|
C6
|
A:BE7305
|
3.2
|
10.6
|
0.5
|
O
|
A:GLN137
|
3.2
|
9.5
|
0.4
|
HA
|
A:CYS206
|
3.2
|
13.5
|
0.4
|
C
|
A:GLN137
|
3.3
|
8.7
|
0.6
|
HA
|
A:PRO138
|
3.3
|
12.1
|
1.0
|
C
|
A:GLU205
|
3.4
|
8.8
|
1.0
|
SG
|
A:CYS206
|
3.4
|
11.0
|
0.4
|
C
|
A:GLN137
|
3.4
|
10.0
|
0.4
|
CB
|
A:CYS206
|
3.4
|
7.4
|
0.6
|
CA
|
A:CYS206
|
3.5
|
11.2
|
0.4
|
CA
|
A:CYS206
|
3.5
|
6.6
|
0.6
|
H
|
A:GLN137
|
3.6
|
11.8
|
0.6
|
H
|
A:GLN137
|
3.6
|
12.6
|
0.4
|
N
|
A:CYS206
|
3.6
|
10.3
|
0.4
|
HB3
|
A:CYS206
|
3.6
|
8.8
|
0.6
|
N
|
A:CYS206
|
3.7
|
7.3
|
0.6
|
N
|
A:GLN137
|
3.7
|
9.8
|
0.6
|
N
|
A:GLN137
|
3.7
|
10.5
|
0.4
|
O
|
A:HOH540
|
3.8
|
19.9
|
1.0
|
H
|
A:GLU205
|
3.8
|
10.3
|
1.0
|
N
|
A:PRO138
|
3.9
|
9.7
|
1.0
|
HB2
|
A:CYS206
|
3.9
|
15.3
|
0.4
|
CA
|
A:PRO138
|
4.1
|
10.1
|
1.0
|
CA
|
A:GLN137
|
4.1
|
8.7
|
0.6
|
CA
|
A:GLN137
|
4.1
|
9.9
|
0.4
|
HB3
|
A:LEU204
|
4.1
|
12.2
|
1.0
|
O
|
A:VAL135
|
4.1
|
12.9
|
1.0
|
N
|
A:GLU205
|
4.1
|
8.6
|
1.0
|
C
|
A:GLN136
|
4.2
|
10.7
|
1.0
|
H
|
A:CYS206
|
4.2
|
12.4
|
0.4
|
CA
|
A:GLU205
|
4.3
|
9.1
|
1.0
|
HA
|
A:GLN136
|
4.3
|
13.5
|
1.0
|
HB2
|
A:CYS206
|
4.3
|
8.8
|
0.6
|
H
|
A:CYS206
|
4.3
|
8.8
|
0.6
|
HA
|
A:GLN137
|
4.4
|
10.4
|
0.6
|
HA
|
A:GLN137
|
4.4
|
11.9
|
0.4
|
C3
|
A:BE7305
|
4.4
|
10.9
|
0.5
|
HB2
|
A:GLU205
|
4.4
|
11.8
|
1.0
|
C7
|
A:BE7305
|
4.5
|
10.9
|
0.5
|
C
|
A:VAL135
|
4.5
|
10.7
|
1.0
|
HA
|
A:VAL135
|
4.6
|
12.9
|
1.0
|
CA
|
A:GLN136
|
4.6
|
11.3
|
1.0
|
HD3
|
A:PRO138
|
4.7
|
12.9
|
1.0
|
O
|
A:GLN136
|
4.7
|
11.8
|
1.0
|
HB3
|
A:PRO138
|
4.8
|
13.9
|
1.0
|
N
|
A:GLN136
|
4.8
|
10.7
|
1.0
|
C
|
A:LEU204
|
4.9
|
8.4
|
1.0
|
CB
|
A:GLU205
|
4.9
|
9.9
|
1.0
|
CD
|
A:PRO138
|
4.9
|
10.8
|
1.0
|
C2
|
A:BE7305
|
4.9
|
11.7
|
0.5
|
O
|
A:HOH574
|
5.0
|
38.6
|
1.0
|
C
|
A:CYS206
|
5.0
|
7.3
|
0.6
|
C
|
A:CYS206
|
5.0
|
9.8
|
0.4
|
|
Reference:
S.Gloeckner,
A.Heine,
G.Klebe.
Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide To Be Published.
Page generated: Sun Aug 11 08:18:47 2024
|