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Mercury in PDB 6wzb: Crystal Structure of the Gltph V216C-G388C Mutant Cross-Linked with Divalent Mercury

Protein crystallography data

The structure of Crystal Structure of the Gltph V216C-G388C Mutant Cross-Linked with Divalent Mercury, PDB code: 6wzb was solved by I.Chen, J.Font, R.Ryan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.31 / 3.45
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 112.111, 204.573, 207.372, 90, 90, 90
R / Rfree (%) 23.3 / 26.8

Other elements in 6wzb:

The structure of Crystal Structure of the Gltph V216C-G388C Mutant Cross-Linked with Divalent Mercury also contains other interesting chemical elements:

Sodium (Na) 6 atoms

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of the Gltph V216C-G388C Mutant Cross-Linked with Divalent Mercury (pdb code 6wzb). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 3 binding sites of Mercury where determined in the Crystal Structure of the Gltph V216C-G388C Mutant Cross-Linked with Divalent Mercury, PDB code: 6wzb:
Jump to Mercury binding site number: 1; 2; 3;

Mercury binding site 1 out of 3 in 6wzb

Go back to Mercury Binding Sites List in 6wzb
Mercury binding site 1 out of 3 in the Crystal Structure of the Gltph V216C-G388C Mutant Cross-Linked with Divalent Mercury


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of the Gltph V216C-G388C Mutant Cross-Linked with Divalent Mercury within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg504

b:184.1
occ:1.00
SG A:CYS388 2.6 121.1 1.0
CD1 A:ILE213 3.2 107.7 1.0
CB A:CYS216 3.2 130.4 1.0
CB A:CYS388 3.2 115.2 1.0
SG A:CYS216 3.2 152.6 1.0
O A:MET385 3.5 117.0 1.0
CA A:MET385 3.6 95.2 1.0
C A:MET385 4.0 102.9 1.0
CD1 A:LEU228 4.0 100.2 1.0
O A:LEU212 4.0 103.2 1.0
CG A:MET385 4.2 98.9 1.0
CA A:ILE213 4.3 97.9 1.0
O A:ALA384 4.3 103.6 1.0
CB A:MET385 4.3 92.6 1.0
CG1 A:ILE213 4.4 103.9 1.0
C A:LEU212 4.6 96.9 1.0
CG1 A:VAL224 4.6 127.6 1.0
N A:MET385 4.6 94.1 1.0
CB A:ILE213 4.6 98.9 1.0
CA A:CYS388 4.6 111.6 1.0
N A:ILE213 4.7 97.0 1.0
CA A:CYS216 4.7 115.0 1.0
C A:ALA384 4.8 95.8 1.0
CE A:MET385 5.0 110.8 1.0
N A:CYS388 5.0 110.8 1.0

Mercury binding site 2 out of 3 in 6wzb

Go back to Mercury Binding Sites List in 6wzb
Mercury binding site 2 out of 3 in the Crystal Structure of the Gltph V216C-G388C Mutant Cross-Linked with Divalent Mercury


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of the Gltph V216C-G388C Mutant Cross-Linked with Divalent Mercury within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg504

b:185.0
occ:1.00
SG B:CYS388 2.5 106.2 1.0
CB B:CYS216 3.2 122.6 1.0
SG B:CYS216 3.3 129.1 1.0
CB B:CYS388 3.3 100.1 1.0
CD1 B:ILE213 3.4 94.7 1.0
O B:MET385 3.5 118.9 1.0
CA B:MET385 3.5 100.5 1.0
C B:MET385 4.0 108.5 1.0
O B:LEU212 4.0 115.0 1.0
CG B:MET385 4.1 105.8 1.0
O B:ALA384 4.1 106.9 1.0
CB B:MET385 4.3 98.8 1.0
CD1 B:LEU228 4.3 81.8 1.0
CA B:ILE213 4.3 96.9 1.0
N B:MET385 4.5 96.5 1.0
C B:LEU212 4.5 108.7 1.0
CG1 B:ILE213 4.6 93.7 1.0
CA B:CYS388 4.7 97.7 1.0
C B:ALA384 4.7 97.1 1.0
N B:ILE213 4.7 100.7 1.0
CA B:CYS216 4.7 120.7 1.0
CB B:ILE213 4.7 91.0 1.0
CG1 B:VAL224 4.7 115.7 1.0
N B:CYS388 5.0 95.2 1.0
CE B:MET385 5.0 118.6 1.0

Mercury binding site 3 out of 3 in 6wzb

Go back to Mercury Binding Sites List in 6wzb
Mercury binding site 3 out of 3 in the Crystal Structure of the Gltph V216C-G388C Mutant Cross-Linked with Divalent Mercury


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of the Gltph V216C-G388C Mutant Cross-Linked with Divalent Mercury within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg504

b:200.7
occ:1.00
SG C:CYS388 2.5 113.7 1.0
CB C:CYS216 3.2 143.9 1.0
SG C:CYS216 3.2 159.8 1.0
CB C:CYS388 3.2 111.6 1.0
CD1 C:ILE213 3.3 104.5 1.0
O C:MET385 3.6 125.1 1.0
CA C:MET385 3.6 108.5 1.0
O C:LEU212 4.0 127.6 1.0
C C:MET385 4.0 114.1 1.0
CG C:MET385 4.1 103.6 1.0
CD1 C:LEU228 4.2 107.0 1.0
CA C:ILE213 4.2 110.7 1.0
CB C:MET385 4.3 99.2 1.0
O C:ALA384 4.3 113.3 1.0
CG1 C:ILE213 4.5 100.2 1.0
C C:LEU212 4.5 114.3 1.0
N C:MET385 4.6 111.9 1.0
CG1 C:VAL224 4.6 164.3 1.0
CB C:ILE213 4.7 105.2 1.0
CA C:CYS388 4.7 119.1 1.0
CA C:CYS216 4.7 133.9 1.0
N C:ILE213 4.7 112.2 1.0
C C:ALA384 4.8 111.5 1.0
CE C:MET385 5.0 114.9 1.0

Reference:

I.Chen, S.Pant, Q.Wu, R.Cater, M.Sobti, R.Vandenberg, A.G.Stewart, E.Tajkhorshid, J.Font, R.M.Ryan. Glutamate Transporters Have A Chloride Channel with Two Hydrophobic Gates Nature 2021.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-021-03240-9
Page generated: Wed Mar 3 14:07:43 2021

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