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Mercury in PDB 6y6e: Drosophila Unr CSD456

Protein crystallography data

The structure of Drosophila Unr CSD456, PDB code: 6y6e was solved by N.M.Hollmann, P.K.A.Jagtap, J.Hennig, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 77.84 / 2.02
Space group P 62
Cell size a, b, c (Å), α, β, γ (°) 89.880, 89.880, 58.750, 90.00, 90.00, 120.00
R / Rfree (%) 21.5 / 25.1

Mercury Binding Sites:

The binding sites of Mercury atom in the Drosophila Unr CSD456 (pdb code 6y6e). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 4 binding sites of Mercury where determined in the Drosophila Unr CSD456, PDB code: 6y6e:
Jump to Mercury binding site number: 1; 2; 3; 4;

Mercury binding site 1 out of 4 in 6y6e

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Mercury binding site 1 out of 4 in the Drosophila Unr CSD456


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Drosophila Unr CSD456 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg301

b:40.1
occ:0.62
O A:CYS223 2.7 50.6 1.0
SG A:CYS223 3.0 49.0 1.0
O A:LEU220 3.0 39.4 1.0
O A:HOH600 3.0 50.6 1.0
C A:CYS223 3.4 50.6 1.0
O A:HOH418 3.6 48.5 1.0
CB A:CYS223 3.7 45.8 1.0
N A:PRO226 3.7 52.4 1.0
CA A:PRO226 3.8 47.7 1.0
CD2 A:LEU220 3.9 37.4 1.0
C A:LEU220 3.9 37.4 1.0
CA A:LEU220 3.9 35.8 1.0
CA A:CYS223 3.9 45.4 1.0
CB A:PRO226 4.0 48.8 1.0
C A:LYS225 4.0 55.2 1.0
CB A:LEU220 4.2 38.8 1.0
CD A:PRO226 4.2 55.8 1.0
N A:LYS225 4.2 61.5 1.0
N A:CYS223 4.2 43.5 1.0
N A:GLU224 4.3 48.7 1.0
O A:LYS225 4.3 52.9 1.0
C A:GLU224 4.5 58.5 1.0
CA A:GLU224 4.5 55.3 1.0
CG A:LEU220 4.6 38.7 1.0
CA A:LYS225 4.6 60.3 1.0
CG A:PRO226 4.6 55.1 1.0

Mercury binding site 2 out of 4 in 6y6e

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Mercury binding site 2 out of 4 in the Drosophila Unr CSD456


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Drosophila Unr CSD456 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg302

b:54.5
occ:0.50
SG A:CYS246 3.0 58.1 1.0
O A:HOH520 3.1 53.5 1.0
SD A:MET239 3.2 62.4 1.0
N A:CYS246 3.4 43.2 1.0
O A:HOH601 3.5 26.1 1.0
CB A:CYS246 3.6 48.0 1.0
C A:GLU245 3.6 45.1 1.0
O A:HOH535 3.8 44.4 1.0
O A:HOH589 3.9 46.1 1.0
CA A:GLU245 4.0 48.0 1.0
CA A:CYS246 4.0 40.9 1.0
O A:GLU245 4.2 44.3 1.0
CE A:MET239 4.3 62.0 1.0
N A:GLU245 4.5 47.1 1.0
CG A:MET239 4.7 57.0 1.0
O A:LYS244 4.8 49.8 1.0
CB A:MET239 4.9 50.2 1.0
C A:LYS244 4.9 48.9 1.0

Mercury binding site 3 out of 4 in 6y6e

Go back to Mercury Binding Sites List in 6y6e
Mercury binding site 3 out of 4 in the Drosophila Unr CSD456


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Drosophila Unr CSD456 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg303

b:53.4
occ:0.22
HG A:EMC303 0.0 53.4 0.2
C1 A:EMC303 2.0 53.4 0.2
O A:GLY230 2.8 53.5 1.0
O A:HOH593 2.8 47.9 1.0
C2 A:EMC303 2.9 53.4 0.2
CB A:CYS184 3.2 48.4 1.0
O A:HOH611 3.6 56.7 1.0
C A:GLY230 3.8 50.5 1.0
N A:ARG232 3.8 48.3 1.0
C A:GLU231 3.9 43.5 1.0
CA A:CYS184 4.1 44.2 1.0
CA A:ARG232 4.1 46.6 1.0
O A:HOH606 4.2 50.4 1.0
O A:GLU231 4.2 45.1 1.0
CB A:ARG232 4.3 49.7 1.0
CA A:GLU231 4.5 45.9 1.0
N A:GLU231 4.5 45.2 1.0
SG A:CYS184 4.6 51.0 1.0
CA A:GLY230 4.6 48.7 1.0
O A:HOH572 4.7 47.5 1.0
CD A:ARG232 4.8 50.4 1.0
N A:CYS184 5.0 41.3 1.0

Mercury binding site 4 out of 4 in 6y6e

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Mercury binding site 4 out of 4 in the Drosophila Unr CSD456


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Drosophila Unr CSD456 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg304

b:52.0
occ:0.18
HG A:EMC304 0.0 52.0 0.2
C1 A:EMC304 2.0 52.0 0.2
O A:ALA119 2.8 43.0 1.0
SG A:CYS114 3.2 48.4 1.0
CB A:ARG117 3.2 45.8 1.0
CD A:ARG117 3.3 50.5 1.0
CB A:LEU121 3.3 40.8 1.0
C A:ALA119 3.8 49.2 1.0
CG A:ARG117 3.9 49.8 1.0
CA A:LEU121 3.9 41.9 1.0
N A:LEU121 3.9 42.5 1.0
CB A:CYS114 3.9 43.4 1.0
O A:HOH408 3.9 43.8 1.0
O A:HOH412 4.0 47.2 1.0
CG A:LEU121 4.1 43.8 1.0
CD2 A:LEU121 4.1 44.3 1.0
CD1 A:LEU121 4.1 46.7 1.0
C A:ARG120 4.2 45.1 1.0
O A:ARG120 4.5 44.0 1.0
N A:ALA119 4.6 53.5 1.0
NE A:ARG117 4.6 46.6 1.0
CA A:ARG117 4.6 47.7 1.0
CA A:ALA119 4.6 54.5 1.0
N A:ARG120 4.7 49.7 1.0
C A:ARG117 4.7 47.5 1.0
CA A:ARG120 4.8 45.6 1.0
CB A:ALA119 4.8 58.3 1.0
O A:HOH485 4.8 54.3 1.0
O A:ARG117 4.9 42.0 1.0

Reference:

N.M.Hollmann, P.K.A.Jagtap, P.Masiewicz, T.Guitart, B.Simon, J.Provaznik, F.Stein, P.Haberkant, L.J.Sweetapple, L.Villacorte, D.Mooijman, V.Benes, M.Savitski, F.Gebauer, J.Hennig. Upstream of N-Ras: How Non-Rna Binding Domains Mediate Rna Structure Specificity To Be Published.
Page generated: Sun Dec 13 19:18:27 2020

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