Mercury in PDB 7tfy: [T:Ag+/HG2+:T--(PH11-PH7; 300S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 300S

The structure of [T:Ag+/HG2+:T--(PH11-PH7; 300S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 300S, PDB code: 7tfy was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.40 / 4.71
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	106.187, 106.187, 89.408, 90, 90, 120
R / Rfree (%)	25.6 / 32.6

The binding sites of Mercury atom in the [T:Ag+/HG2+:T--(PH11-PH7; 300S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 300S (pdb code 7tfy). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the [T:Ag+/HG2+:T--(PH11-PH7; 300S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 300S, PDB code: 7tfy:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in the [T:Ag+/HG2+:T--(PH11-PH7; 300S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 300S


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of [T:Ag+/HG2+:T--(PH11-PH7; 300S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 300S within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg101 b:144.9 occ:0.42 O4 B:DT4 2.4 195.6 1.0 O4 A:DT12 2.8 213.3 1.0 N6 B:DA3 3.2 156.7 1.0 O4 A:DT11 3.3 171.1 1.0 C4 B:DT4 3.6 201.0 1.0 HG B:HG101 3.8 133.8 0.7 C4 A:DT11 3.8 181.8 1.0 C6 B:DA3 3.9 156.8 1.0 C4 A:DT12 4.0 213.3 1.0 N3 B:DT4 4.3 222.2 1.0 C5 B:DA3 4.4 155.8 1.0 N7 B:DA3 4.5 154.4 1.0 N3 A:DT11 4.5 175.3 1.0 C5 A:DT11 4.5 206.6 1.0 C7 A:DT12 4.5 213.4 1.0 C7 A:DT11 4.6 209.5 1.0 N6 B:DA5 4.7 254.6 1.0 C5 B:DT4 4.7 188.6 1.0 N1 B:DA3 4.7 158.1 1.0 N1 B:DA5 4.7 273.3 1.0 O4 A:DT13 4.8 123.7 1.0 C5 A:DT12 4.8 213.3 1.0 C7 B:DT4 4.9 165.7 1.0 C6 B:DA5 5.0 250.5 1.0 N3 A:DT12 5.0 213.5 1.0

Mercury binding site 2 out of 2 in the [T:Ag+/HG2+:T--(PH11-PH7; 300S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 300S


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of [T:Ag+/HG2+:T--(PH11-PH7; 300S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 300S within 5.0Å range: probe atom residue distance (Å) B Occ B:Hg101 b:133.8 occ:0.70 O4 A:DT12 2.4 213.3 1.0 N3 A:DT12 2.5 213.5 1.0 N3 B:DT4 2.6 222.2 1.0 C4 A:DT12 2.8 213.3 1.0 O4 B:DT4 3.4 195.6 1.0 C4 B:DT4 3.4 201.0 1.0 N1 B:DA3 3.5 158.1 1.0 C2 B:DT4 3.5 227.6 1.0 O2 B:DT4 3.5 244.9 1.0 N3 A:DT13 3.7 123.7 1.0 C2 A:DT12 3.8 213.8 1.0 HG A:HG101 3.8 144.9 0.4 C6 B:DA3 3.9 156.8 1.0 C2 B:DA5 3.9 284.7 1.0 N6 B:DA3 4.0 156.7 1.0 C2 B:DA3 4.0 158.2 1.0 N1 B:DA5 4.0 273.3 1.0 O2 A:DT12 4.1 214.3 1.0 N3 B:DA5 4.2 232.9 1.0 C4 A:DT13 4.2 123.6 1.0 C5 A:DT12 4.2 213.3 1.0 C2 A:DT13 4.2 123.9 1.0 O4 A:DT13 4.4 123.7 1.0 O2 A:DT13 4.4 124.1 1.0 C6 B:DA5 4.4 250.5 1.0 C4 B:DA5 4.5 231.9 1.0 C5 B:DA5 4.6 238.7 1.0 C5 B:DA3 4.7 155.8 1.0 N1 B:DT4 4.8 206.9 1.0 C5 B:DT4 4.8 188.6 1.0 N1 A:DT12 4.8 213.8 1.0 N3 B:DA3 4.9 157.3 1.0 N3 A:DT11 4.9 175.3 1.0

B.Lu, Y.P.Ohayon, R.Sha, K.Woloszyn, L.Rothschild, S.Wind, W.Hendrickson, C.Mao, N.C.Seeman, S.Vecchioni. Crystallographic pH Titration of Silver and Mercury Mediated Dna Base Pairs To Be Published.