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Mercury in PDB 7tg6: [T:Ag+/HG2+:T--(PH11-PH7; 30S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 30S

Protein crystallography data

The structure of [T:Ag+/HG2+:T--(PH11-PH7; 30S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 30S, PDB code: 7tg6 was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.59 / 4.82
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 106.897, 106.897, 89.463, 90, 90, 120
R / Rfree (%) 19.2 / 27.8

Mercury Binding Sites:

The binding sites of Mercury atom in the [T:Ag+/HG2+:T--(PH11-PH7; 30S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 30S (pdb code 7tg6). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the [T:Ag+/HG2+:T--(PH11-PH7; 30S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 30S, PDB code: 7tg6:

Mercury binding site 1 out of 1 in 7tg6

Go back to Mercury Binding Sites List in 7tg6
Mercury binding site 1 out of 1 in the [T:Ag+/HG2+:T--(PH11-PH7; 30S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 30S


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of [T:Ag+/HG2+:T--(PH11-PH7; 30S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 30S within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg101

b:157.3
occ:0.85
N3 B:DT4 2.4 275.7 1.0
N3 A:DT12 2.4 217.2 1.0
O4 B:DT4 2.5 247.2 1.0
O4 A:DT12 2.5 219.1 1.0
C4 B:DT4 2.8 253.1 1.0
C4 A:DT12 2.8 217.1 1.0
N1 B:DA5 3.4 235.7 1.0
C2 B:DA5 3.5 248.8 1.0
N1 B:DA3 3.5 169.0 1.0
C2 B:DT4 3.6 282.1 1.0
C2 A:DT12 3.6 215.2 1.0
C6 B:DA5 3.7 212.3 1.0
C6 B:DA3 3.8 166.6 1.0
N6 B:DA3 3.8 166.0 1.0
O2 A:DT12 3.9 215.7 1.0
O2 B:DT4 3.9 300.8 1.0
N3 B:DA5 3.9 198.3 1.0
N3 A:DT13 4.1 193.4 1.0
C5 B:DA5 4.2 201.7 1.0
C2 B:DA3 4.2 169.8 1.0
C4 B:DA5 4.2 196.5 1.0
C5 A:DT12 4.2 214.4 1.0
C5 B:DT4 4.2 240.2 1.0
C4 A:DT13 4.3 191.7 1.0
O4 A:DT13 4.3 192.6 1.0
N6 B:DA5 4.3 214.9 1.0
O4 A:DT11 4.5 199.2 1.0
C2 A:DT13 4.6 192.8 1.0
N1 B:DT4 4.7 260.9 1.0
N1 A:DT12 4.7 212.6 1.0
C5 B:DA3 4.7 165.2 1.0
N3 A:DT11 4.8 201.9 1.0
C4 A:DT11 4.9 208.9 1.0
C6 B:DT4 4.9 234.0 1.0
C6 A:DT12 4.9 212.3 1.0
O2 A:DT13 5.0 194.6 1.0

Reference:

B.Lu, Y.P.Ohayon, R.Sha, K.Woloszyn, L.Rothschild, S.Wind, W.Hendrickson, C.Mao, N.C.Seeman, S.Vecchioni. Crystallographic pH Titration of Silver and Mercury Mediated Dna Base Pairs To Be Published.
Page generated: Sun Aug 11 08:51:16 2024

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