Mercury in PDB 7tgc: [T:Ag+/HG2+:T--(PH8.5-PH11; 90S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 8.5 and Soaked in pH 11 with Ag+ and HG2+ For 90S

The structure of [T:Ag+/HG2+:T--(PH8.5-PH11; 90S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 8.5 and Soaked in pH 11 with Ag+ and HG2+ For 90S, PDB code: 7tgc was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.57 / 5.19
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	106.941, 106.941, 88.902, 90, 90, 120
R / Rfree (%)	24.7 / 31.3

The binding sites of Mercury atom in the [T:Ag+/HG2+:T--(PH8.5-PH11; 90S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 8.5 and Soaked in pH 11 with Ag+ and HG2+ For 90S (pdb code 7tgc). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the [T:Ag+/HG2+:T--(PH8.5-PH11; 90S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 8.5 and Soaked in pH 11 with Ag+ and HG2+ For 90S, PDB code: 7tgc:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in the [T:Ag+/HG2+:T--(PH8.5-PH11; 90S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 8.5 and Soaked in pH 11 with Ag+ and HG2+ For 90S


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of [T:Ag+/HG2+:T--(PH8.5-PH11; 90S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 8.5 and Soaked in pH 11 with Ag+ and HG2+ For 90S within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg101 b:102.2 occ:0.42 N3 A:DT12 2.5 358.9 1.0 O4 A:DT12 2.6 363.0 1.0 N3 B:DT4 2.8 291.4 1.0 C4 A:DT12 2.9 359.2 1.0 C2 B:DA5 3.3 364.4 1.0 O2 B:DT4 3.6 317.4 1.0 N1 B:DA5 3.6 349.3 1.0 O4 B:DT4 3.6 279.3 1.0 C2 B:DT4 3.6 297.1 1.0 C2 A:DT12 3.6 355.1 1.0 C4 B:DT4 3.6 279.3 1.0 N3 B:DA5 3.6 313.5 1.0 HG B:HG101 3.7 103.4 0.2 O2 A:DT12 3.9 355.4 1.0 N1 B:DA3 4.0 281.9 1.0 C4 B:DA5 4.1 309.0 1.0 C6 B:DA5 4.1 323.1 1.0 N3 A:DT13 4.2 277.9 1.0 C5 A:DT12 4.3 354.9 1.0 C5 B:DA5 4.3 311.8 1.0 C6 B:DA3 4.4 277.9 1.0 N6 B:DA3 4.5 278.6 1.0 C2 B:DA3 4.5 281.2 1.0 N3 A:DT11 4.6 342.6 1.0 C2 A:DT13 4.6 276.4 1.0 C4 A:DT13 4.6 274.9 1.0 O2 A:DT13 4.7 279.5 1.0 N1 A:DT12 4.7 351.1 1.0 O4 A:DT11 4.8 349.4 1.0 O4 A:DT13 4.8 276.7 1.0 N6 B:DA5 4.9 323.7 1.0 N1 B:DT4 4.9 280.0 1.0 N9 B:DA5 4.9 324.6 1.0 C6 A:DT12 5.0 351.1 1.0 C5 B:DT4 5.0 275.1 1.0

Mercury binding site 2 out of 2 in the [T:Ag+/HG2+:T--(PH8.5-PH11; 90S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 8.5 and Soaked in pH 11 with Ag+ and HG2+ For 90S


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of [T:Ag+/HG2+:T--(PH8.5-PH11; 90S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 8.5 and Soaked in pH 11 with Ag+ and HG2+ For 90S within 5.0Å range: probe atom residue distance (Å) B Occ B:Hg101 b:103.4 occ:0.20 O4 B:DT4 2.1 279.3 1.0 O4 A:DT12 2.7 363.0 1.0 N6 B:DA3 3.2 278.6 1.0 O4 A:DT11 3.3 349.4 1.0 C4 B:DT4 3.3 279.3 1.0 HG A:HG101 3.7 102.2 0.4 C6 B:DA3 3.8 277.9 1.0 C4 A:DT11 3.9 345.4 1.0 N3 B:DT4 3.9 291.4 1.0 C4 A:DT12 3.9 359.2 1.0 C5 B:DA3 4.3 273.2 1.0 N6 B:DA5 4.4 323.7 1.0 N7 B:DA3 4.4 268.6 1.0 C5 B:DT4 4.4 275.1 1.0 N1 B:DA5 4.4 349.3 1.0 N3 A:DT11 4.5 342.6 1.0 N1 B:DA3 4.6 281.9 1.0 C5 A:DT11 4.6 343.6 1.0 C6 B:DA5 4.6 323.1 1.0 C7 B:DT4 4.7 270.5 1.0 C7 A:DT12 4.7 355.1 1.0 C7 A:DT11 4.8 346.7 1.0 O4 A:DT13 4.8 276.7 1.0 N3 A:DT12 4.8 358.9 1.0 C5 A:DT12 4.8 354.9 1.0

B.Lu, Y.P.Ohayon, R.Sha, K.Woloszyn, L.Rothschild, S.Wind, W.Hendrickson, C.Mao, N.C.Seeman, S.Vecchioni. Crystallographic pH Titration of Silver and Mercury Mediated Dna Base Pairs To Be Published.