Atomistry » Mercury » PDB 7ca2-9ca2 » 7v3b
Atomistry »
  Mercury »
    PDB 7ca2-9ca2 »
      7v3b »

Mercury in PDB 7v3b: Crystal Structure of Np Exonuclease C409A-Pcmps Complex

Protein crystallography data

The structure of Crystal Structure of Np Exonuclease C409A-Pcmps Complex, PDB code: 7v3b was solved by Y.Y.Hsiao, K.W.Huang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.83 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 122.703, 58.897, 69.188, 90, 90, 90
R / Rfree (%) 18.6 / 21.8

Other elements in 7v3b:

The structure of Crystal Structure of Np Exonuclease C409A-Pcmps Complex also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Magnesium (Mg) 2 atoms

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Np Exonuclease C409A-Pcmps Complex (pdb code 7v3b). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the Crystal Structure of Np Exonuclease C409A-Pcmps Complex, PDB code: 7v3b:

Mercury binding site 1 out of 1 in 7v3b

Go back to Mercury Binding Sites List in 7v3b
Mercury binding site 1 out of 1 in the Crystal Structure of Np Exonuclease C409A-Pcmps Complex


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Np Exonuclease C409A-Pcmps Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg602

b:27.5
occ:0.52
HG A:PMB602 0.0 27.5 0.5
C4 A:PMB602 2.1 23.1 0.5
SG A:CYS461 2.4 31.5 1.0
OD1 A:ASP483 2.9 46.7 1.0
C3 A:PMB602 3.0 22.1 0.5
C5 A:PMB602 3.0 26.2 0.5
O A:CYS461 3.1 26.2 1.0
O A:SER464 3.1 42.7 1.0
CB A:CYS461 3.3 27.9 1.0
C A:CYS461 3.4 25.8 1.0
O A:HOH705 3.5 45.0 1.0
O A:HOH775 3.7 36.8 1.0
CA A:ASP483 3.7 35.8 1.0
CG A:ASP483 3.8 47.0 1.0
CA A:CYS461 3.8 24.1 1.0
CB A:ASP483 4.0 40.2 1.0
O A:HOH722 4.0 41.4 1.0
N A:GLN462 4.0 24.4 1.0
O A:ILE482 4.1 27.4 1.0
N A:CYS461 4.3 21.1 1.0
C A:SER464 4.3 44.7 1.0
C2 A:PMB602 4.3 28.9 0.5
C6 A:PMB602 4.3 30.9 0.5
N A:ASP483 4.5 32.1 1.0
CA A:GLN462 4.6 25.0 1.0
C A:GLN462 4.6 30.1 1.0
N A:ILE484 4.6 37.6 1.0
C A:ILE482 4.6 31.7 1.0
N A:SER464 4.7 39.5 1.0
C A:ASP483 4.7 36.9 1.0
O A:GLN462 4.8 25.7 1.0
C1 A:PMB602 4.8 31.6 0.5
N A:GLY463 4.9 35.7 1.0
OD2 A:ASP483 4.9 48.8 1.0

Reference:

K.W.Huang, J.W.Chen, T.Y.Hua, Y.Y.Chu, T.Y.Chiu, J.Y.Liu, C.I.Tu, K.C.Hsu, Y.T.Kao, J.W.Chu, Y.Y.Hsiao. Targeted Covalent Inhibitors Allosterically Deactivate the Deddhlassa Fever Virus Np Exonuclease From Alternative Distal Site. Jacs Au 2021.
ISSN: ESSN 2691-3704
DOI: 10.1021/JACSAU.1C00420
Page generated: Fri Dec 17 09:38:22 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy