Mercury in PDB 8dx9: [C:HG2+/Ag+:C--pH 6.5] Metal-Mediated Dna Base Pair in Tensegrity Triangle in Ag+ and HG2+ Solution

The structure of [C:HG2+/Ag+:C--pH 6.5] Metal-Mediated Dna Base Pair in Tensegrity Triangle in Ag+ and HG2+ Solution, PDB code: 8dx9 was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.69 / 4.55
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	106.053, 106.053, 93.062, 90, 90, 120
R / Rfree (%)	19.3 / 24.8

The binding sites of Mercury atom in the [C:HG2+/Ag+:C--pH 6.5] Metal-Mediated Dna Base Pair in Tensegrity Triangle in Ag+ and HG2+ Solution (pdb code 8dx9). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the [C:HG2+/Ag+:C--pH 6.5] Metal-Mediated Dna Base Pair in Tensegrity Triangle in Ag+ and HG2+ Solution, PDB code: 8dx9:

Mercury binding site 1 out of 1 in the [C:HG2+/Ag+:C--pH 6.5] Metal-Mediated Dna Base Pair in Tensegrity Triangle in Ag+ and HG2+ Solution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of [C:HG2+/Ag+:C--pH 6.5] Metal-Mediated Dna Base Pair in Tensegrity Triangle in Ag+ and HG2+ Solution within 5.0Å range: probe atom residue distance (Å) B Occ B:Hg101 b:245.9 occ:0.18 N4 B:DC4 2.4 225.9 1.0 N6 B:DA3 2.7 249.5 1.0 N4 A:DC12 2.7 317.6 1.0 C6 B:DA3 3.3 249.5 1.0 C4 B:DC4 3.4 226.9 1.0 N3 B:DC4 3.5 228.3 1.0 C5 B:DA3 3.7 248.7 1.0 O4 A:DT11 3.8 336.5 1.0 N7 B:DA3 3.8 247.2 1.0 C4 A:DC12 3.9 312.0 1.0 O4 A:DT13 4.0 370.5 1.0 C4 A:DT11 4.2 344.9 1.0 N1 B:DA3 4.3 250.8 1.0 N1 B:DA5 4.4 374.4 1.0 C5 A:DC12 4.5 309.8 1.0 C5 B:DC4 4.6 227.0 1.0 C5 A:DT11 4.7 371.6 1.0 N6 B:DA5 4.7 354.0 1.0 N3 A:DT11 4.7 334.2 1.0 C7 A:DT11 4.8 379.4 1.0 C4 A:DT13 4.8 366.5 1.0 C6 B:DA5 4.8 351.7 1.0 N3 A:DC12 4.9 309.1 1.0 C2 B:DC4 4.9 229.9 1.0 C4 B:DA3 4.9 249.8 1.0 C8 B:DA3 4.9 247.3 1.0

B.Lu, Y.P.Ohayon, K.Woloszyn, C.F.Yang, J.B.Yoder, L.J.Rothschild, S.J.Wind, W.A.Hendrickson, C.Mao, N.C.Seeman, J.W.Canary, R.Sha, S.Vecchioni. Heterobimetallic Base Pair Programming in Designer 3D Dna Crystals. J.Am.Chem.Soc. 2023.
ISSN: ESSN 1520-5126
PubMed: 37530628
DOI: 10.1021/JACS.3C05478