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Mercury in PDB 8wgl: Crystal Structure of Rhodothermus Marinus Substrate-Binding Protein (Hg Soaking)

Protein crystallography data

The structure of Crystal Structure of Rhodothermus Marinus Substrate-Binding Protein (Hg Soaking), PDB code: 8wgl was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.11 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.645, 45.209, 57.041, 90, 91.72, 90
R / Rfree (%) 19.2 / 25

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Rhodothermus Marinus Substrate-Binding Protein (Hg Soaking) (pdb code 8wgl). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Crystal Structure of Rhodothermus Marinus Substrate-Binding Protein (Hg Soaking), PDB code: 8wgl:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in 8wgl

Go back to Mercury Binding Sites List in 8wgl
Mercury binding site 1 out of 2 in the Crystal Structure of Rhodothermus Marinus Substrate-Binding Protein (Hg Soaking)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Rhodothermus Marinus Substrate-Binding Protein (Hg Soaking) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg201

b:37.9
occ:0.35
O A:HOH323 2.2 19.1 1.0
SG A:CYS145 2.6 33.1 1.0
CE A:MET167 3.4 48.7 1.0
O A:GLY143 3.4 33.2 1.0
N A:VAL132 3.6 23.2 1.0
CG1 A:VAL163 3.7 27.4 1.0
N A:CYS145 3.7 23.4 1.0
CB A:CYS145 3.7 23.2 1.0
O A:MET130 3.8 26.4 1.0
CA A:PRO131 3.8 32.3 1.0
C A:ALA144 4.0 25.2 1.0
CA A:ALA144 4.0 26.6 1.0
CG2 A:VAL132 4.0 22.0 1.0
C A:PRO131 4.1 30.6 1.0
CA A:CYS145 4.1 27.7 1.0
CB A:VAL132 4.3 23.3 1.0
C A:GLY143 4.5 22.8 1.0
CA A:VAL132 4.5 20.3 1.0
C A:MET130 4.7 34.9 1.0
N A:PRO131 4.7 30.2 1.0
OG1 A:THR126 4.8 20.8 1.0
N A:ALA144 4.8 21.4 1.0
O A:ALA144 4.8 30.0 1.0
CB A:PRO131 4.8 25.2 1.0
SD A:MET167 4.8 53.9 1.0
CG A:MET167 4.8 47.5 1.0
O A:VAL132 4.9 23.0 1.0
O A:HOH313 5.0 29.2 1.0
CB A:VAL163 5.0 28.3 1.0

Mercury binding site 2 out of 2 in 8wgl

Go back to Mercury Binding Sites List in 8wgl
Mercury binding site 2 out of 2 in the Crystal Structure of Rhodothermus Marinus Substrate-Binding Protein (Hg Soaking)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of Rhodothermus Marinus Substrate-Binding Protein (Hg Soaking) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg201

b:42.1
occ:0.26
O B:HOH308 2.3 28.6 1.0
SG B:CYS145 2.6 61.1 1.0
N B:VAL132 3.4 26.5 1.0
CG1 B:VAL163 3.4 31.3 1.0
O B:GLY143 3.4 26.9 1.0
N B:CYS145 3.6 27.3 1.0
CA B:PRO131 3.8 26.4 1.0
CG2 B:VAL132 3.9 21.6 1.0
CA B:ALA144 3.9 31.3 1.0
O B:MET130 3.9 25.9 1.0
CB B:VAL132 4.0 27.7 1.0
O B:HOH313 4.0 32.1 1.0
CB B:CYS145 4.0 28.0 1.0
C B:ALA144 4.0 26.8 1.0
C B:PRO131 4.0 25.4 1.0
CA B:VAL132 4.2 26.8 1.0
CA B:CYS145 4.3 30.6 1.0
C B:GLY143 4.4 32.0 1.0
OG1 B:THR126 4.4 31.5 1.0
CG B:MET167 4.5 38.2 1.0
N B:ALA144 4.7 27.5 1.0
O B:VAL132 4.7 26.7 1.0
CB B:VAL163 4.8 34.1 1.0
CB B:PRO131 4.8 26.1 1.0
N B:PRO131 4.8 28.0 1.0
C B:MET130 4.8 27.6 1.0
CE B:MET167 4.9 30.4 1.0
O B:ALA144 4.9 32.5 1.0

Reference:

K.H.Nam, K.H.Nam. N/A N/A.
Page generated: Thu Dec 28 06:34:25 2023

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