Mercury in PDB 9fei: Crystal Structure of Protein D: Defoliating Toxin Form Fusarium Oxysporum F.Sp. Vasinfectum

The structure of Crystal Structure of Protein D: Defoliating Toxin Form Fusarium Oxysporum F.Sp. Vasinfectum, PDB code: 9fei was solved by F.Troilo, A.Doddi, L.Faino, M.C.Bonaccorsi Di Patti, A.Di Matteo, G.Giardina, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	71.40 / 1.47
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	27.843, 50.031, 72.277, 90, 98.91, 90
R / Rfree (%)	16.1 / 18.8

The binding sites of Mercury atom in the Crystal Structure of Protein D: Defoliating Toxin Form Fusarium Oxysporum F.Sp. Vasinfectum (pdb code 9fei). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 3 binding sites of Mercury where determined in the Crystal Structure of Protein D: Defoliating Toxin Form Fusarium Oxysporum F.Sp. Vasinfectum, PDB code: 9fei:
Jump to Mercury binding site number: 1; 2; 3;

Mercury binding site 1 out of 3 in the Crystal Structure of Protein D: Defoliating Toxin Form Fusarium Oxysporum F.Sp. Vasinfectum


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Protein D: Defoliating Toxin Form Fusarium Oxysporum F.Sp. Vasinfectum within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg302 b:18.9 occ:0.35 SG A:CYS85 2.1 12.4 0.5 HG A:HG303 2.1 21.9 0.3 SG A:CYS85 2.5 41.1 0.5 CB A:CYS85 3.0 14.1 0.5 O A:HOH470 3.1 26.0 1.0 CB A:CYS85 3.1 25.9 0.5 CD1 A:ILE165 3.6 24.2 1.0 CG1 A:ILE165 3.7 19.7 1.0 CE1 A:TYR195 3.8 22.4 1.0 CD1 A:TYR195 3.8 20.7 1.0 O A:PRO86 4.3 17.4 1.0 CA A:CYS85 4.3 15.5 0.5 CE2 A:PHE79 4.4 17.5 1.0 CA A:CYS85 4.4 20.1 0.5 C A:CYS85 4.5 16.9 1.0 CD2 A:LEU75 4.6 22.5 1.0 CG2 A:ILE165 4.7 20.8 1.0 CG1 A:ILE89 4.7 27.0 1.0 O A:CYS85 4.8 17.2 1.0 CG A:TYR195 4.8 17.8 1.0 CZ A:TYR195 4.8 20.9 1.0 CB A:ILE165 4.8 19.4 1.0 O A:HOH571 4.9 27.4 1.0 CG A:LEU75 4.9 18.7 1.0 CD1 A:ILE89 4.9 27.6 1.0 N A:PRO86 5.0 16.9 1.0

Mercury binding site 2 out of 3 in the Crystal Structure of Protein D: Defoliating Toxin Form Fusarium Oxysporum F.Sp. Vasinfectum


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of Protein D: Defoliating Toxin Form Fusarium Oxysporum F.Sp. Vasinfectum within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg303 b:21.9 occ:0.35 HG A:HG302 2.1 18.9 0.3 CG2 A:ILE165 3.8 20.8 1.0 CE2 A:PHE79 3.8 17.5 1.0 CG1 A:VAL193 3.9 19.2 1.0 SG A:CYS85 3.9 41.1 0.5 CD1 A:TYR195 4.0 20.7 1.0 O A:HOH470 4.0 26.0 1.0 CG1 A:ILE165 4.0 19.7 1.0 CD2 A:LEU75 4.1 22.5 1.0 CG A:LEU75 4.1 18.7 1.0 SG A:CYS85 4.2 12.4 0.5 CZ A:PHE79 4.3 15.7 1.0 CD1 A:LEU75 4.3 20.8 1.0 CD1 A:ILE165 4.4 24.2 1.0 CB A:ILE165 4.5 19.4 1.0 CG A:TYR195 4.6 17.8 1.0 CB A:TYR195 4.6 15.6 1.0 CE1 A:TYR195 4.6 22.4 1.0 CD2 A:LEU73 4.9 17.9 1.0 CB A:CYS85 4.9 14.1 0.5 CD2 A:PHE79 4.9 16.7 1.0

Mercury binding site 3 out of 3 in the Crystal Structure of Protein D: Defoliating Toxin Form Fusarium Oxysporum F.Sp. Vasinfectum


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of Protein D: Defoliating Toxin Form Fusarium Oxysporum F.Sp. Vasinfectum within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg304 b:26.1 occ:0.20 OE2 A:GLU129 2.1 31.7 1.0 O A:ASP130 2.8 27.3 1.0 O A:HOH550 2.9 44.7 1.0 CD A:GLU129 3.0 34.3 1.0 OE1 A:GLU129 3.2 37.5 1.0 C A:ASP130 3.3 22.9 1.0 CA A:HIS131 3.5 22.5 1.0 N A:HIS131 3.7 22.4 1.0 O A:HOH543 3.7 36.4 1.0 O A:HOH401 3.8 21.9 1.0 C A:HIS131 4.0 21.9 1.0 N A:LEU132 4.2 21.7 1.0 O A:GLU129 4.2 25.5 1.0 CG A:GLU129 4.4 29.3 1.0 O A:HOH462 4.4 32.0 1.0 CA A:ASP130 4.4 22.9 1.0 C A:GLU129 4.6 21.5 1.0 CB A:HIS131 4.7 23.5 1.0 CB A:LEU132 4.7 23.2 1.0 ND1 A:HIS131 4.8 35.0 1.0 N A:ASP130 4.8 21.0 1.0 O A:HIS131 4.9 22.1 1.0

F.Troilo, A.Doddi, L.Faino, M.C.Bonaccorsi Di Patti, A.Di Matteo, G.Giardina. Crystal Structure of Fovdef: Defoliating Toxin Form Fusarium Oxysporum F.Sp. Vasinfectum To Be Published.