Mercury in PDB 1ek8: Crystal Structure of the Ribosome Recycling Factor (Rrf) From Escherichia Coli

The structure of Crystal Structure of the Ribosome Recycling Factor (Rrf) From Escherichia Coli, PDB code: 1ek8 was solved by K.Min, S.W.Suh, K.K.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.30
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	48.064, 48.064, 142.273, 90.00, 90.00, 120.00
R / Rfree (%)	22.8 / 29.7

The binding sites of Mercury atom in the Crystal Structure of the Ribosome Recycling Factor (Rrf) From Escherichia Coli (pdb code 1ek8). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 3 binding sites of Mercury where determined in the Crystal Structure of the Ribosome Recycling Factor (Rrf) From Escherichia Coli, PDB code: 1ek8:
Jump to Mercury binding site number: 1; 2; 3;

Mercury binding site 1 out of 3 in the Crystal Structure of the Ribosome Recycling Factor (Rrf) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of the Ribosome Recycling Factor (Rrf) From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg801 b:58.2 occ:0.20 O A:GLN53 3.0 36.9 1.0 O A:HOH405 3.2 84.5 1.0 OH A:TYR44 4.0 47.3 1.0 CD2 A:LEU54 4.1 41.0 1.0 C A:GLN53 4.2 39.4 1.0 CA A:LEU54 4.3 40.8 1.0 CD2 A:PHE70 4.4 36.3 1.0 HG A:HG802 4.4 67.4 0.2 CZ A:TYR44 4.6 48.1 1.0 N A:LEU54 4.7 40.5 1.0

Mercury binding site 2 out of 3 in the Crystal Structure of the Ribosome Recycling Factor (Rrf) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of the Ribosome Recycling Factor (Rrf) From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg802 b:67.4 occ:0.20 O A:LEU54 3.0 42.0 1.0 N A:ASP71 3.2 34.3 1.0 O A:HOH405 3.3 84.5 1.0 CB A:ASP71 3.5 37.5 1.0 CG1 A:VAL69 3.7 39.7 1.0 N A:PHE70 3.7 36.0 1.0 C A:LEU54 3.8 40.8 1.0 CA A:LEU54 3.9 40.8 1.0 CB A:LEU54 3.9 39.7 1.0 CA A:ASP71 3.9 36.5 1.0 CB A:PHE70 4.0 36.2 1.0 C A:PHE70 4.1 35.4 1.0 CA A:PHE70 4.1 35.8 1.0 O A:ASP71 4.2 34.2 1.0 CG A:MET74 4.2 45.6 1.0 CB A:MET74 4.2 44.7 1.0 CD2 A:LEU54 4.3 41.0 1.0 CE1 A:TYR44 4.4 49.0 1.0 HG A:HG801 4.4 58.2 0.2 C A:ASP71 4.5 37.0 1.0 CD2 A:PHE70 4.6 36.3 1.0 C A:VAL69 4.6 39.6 1.0 CG A:LEU54 4.7 44.3 1.0 CG A:PHE70 4.8 34.8 1.0 CG A:ASP71 4.8 42.1 1.0 OH A:TYR44 4.8 47.3 1.0 CZ A:TYR44 4.9 48.1 1.0 CA A:VAL69 5.0 39.8 1.0 CB A:VAL69 5.0 38.7 1.0

Mercury binding site 3 out of 3 in the Crystal Structure of the Ribosome Recycling Factor (Rrf) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of the Ribosome Recycling Factor (Rrf) From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg803 b:79.3 occ:0.20 NE2 A:GLN123 3.1 50.0 1.0 O A:CYS16 3.3 40.0 1.0 OE1 A:GLN123 3.4 54.4 1.0 CD A:GLN123 3.7 50.9 1.0 CA A:CYS16 3.8 44.3 1.0 C A:CYS16 3.9 41.3 1.0 CB A:ALA19 3.9 35.7 1.0 O A:HOH415 4.0 40.5 1.0 CB A:CYS16 4.0 43.6 1.0 CA A:ALA124 4.1 34.8 1.0 CB A:ALA124 4.3 33.1 1.0 N A:PHE20 4.4 32.6 1.0 CB A:ALA127 4.7 29.3 1.0 N A:ALA124 4.7 35.4 1.0 SG A:CYS16 4.7 53.9 1.0 CB A:PHE20 4.8 33.1 1.0 C A:ALA19 4.9 36.9 1.0 CA A:PHE20 4.9 33.0 1.0 CA A:ALA19 5.0 37.5 1.0

K.K.Kim, K.Min, S.W.Suh. Crystal Structure of the Ribosome Recycling Factor From Escherichia Coli. Embo J. V. 19 2362 2000.
ISSN: ISSN 0261-4189
PubMed: 10811627
DOI: 10.1093/EMBOJ/19.10.2362