Atomistry » Mercury » PDB 1of5-1rsr » 1qz4
Atomistry »
  Mercury »
    PDB 1of5-1rsr »
      1qz4 »

Mercury in PDB 1qz4: Structure of Ycfc Protein of Unknown Function Escherichia Coli

Protein crystallography data

The structure of Structure of Ycfc Protein of Unknown Function Escherichia Coli, PDB code: 1qz4 was solved by Z.Otwinowski, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.102, 62.749, 68.399, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Mercury Binding Sites:

The binding sites of Mercury atom in the Structure of Ycfc Protein of Unknown Function Escherichia Coli (pdb code 1qz4). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 10 binding sites of Mercury where determined in the Structure of Ycfc Protein of Unknown Function Escherichia Coli, PDB code: 1qz4:
Jump to Mercury binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Mercury binding site 1 out of 10 in 1qz4

Go back to Mercury Binding Sites List in 1qz4
Mercury binding site 1 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg301

b:21.0
occ:0.57
SG A:CYS16 2.1 23.6 1.0
O A:HOH384 3.0 36.1 1.0
CB A:CYS16 3.2 9.2 1.0
O A:LEU12 3.2 10.1 1.0
N A:CYS16 3.4 7.2 1.0
CA A:CYS16 3.5 9.9 1.0
CG2 A:THR89 3.6 10.0 1.0
CB A:THR89 4.1 13.4 1.0
C A:ILE15 4.2 5.3 1.0
CB A:ILE15 4.3 2.7 1.0
C A:LEU12 4.3 7.6 1.0
CG2 A:ILE15 4.3 7.6 1.0
CG1 A:VAL72 4.4 28.6 1.0
CD2 A:LEU12 4.7 12.8 1.0
CB A:VAL72 4.8 19.2 1.0
OG1 A:THR89 4.8 22.0 1.0
CB A:LEU12 4.8 9.3 1.0
CA A:LEU12 4.8 6.6 1.0
CA A:ILE15 4.8 5.1 1.0
CA A:LEU69 4.9 11.0 1.0
CE A:MET93 4.9 24.2 1.0
O A:ILE15 5.0 6.8 1.0
CB A:LEU69 5.0 8.6 1.0

Mercury binding site 2 out of 10 in 1qz4

Go back to Mercury Binding Sites List in 1qz4
Mercury binding site 2 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg302

b:32.6
occ:0.52
CE1 A:HIS208 2.4 21.7 1.0
O A:HOH419 3.2 35.4 1.0
ND1 A:HIS208 3.3 34.8 1.0
NE2 A:HIS208 3.3 25.9 1.0
CG A:HIS208 4.4 29.1 1.0
CD2 A:HIS208 4.5 29.5 1.0

Mercury binding site 3 out of 10 in 1qz4

Go back to Mercury Binding Sites List in 1qz4
Mercury binding site 3 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg303

b:30.5
occ:0.38
SG A:CYS31 2.3 18.9 1.0
O A:HOH349 2.3 31.4 1.0
O A:HOH363 2.4 36.6 1.0
O A:CYS31 3.2 20.8 1.0
CD2 A:LEU36 3.2 16.0 1.0
C A:CYS31 3.5 22.7 1.0
CB A:CYS31 3.5 11.8 1.0
N A:CYS31 3.5 20.3 1.0
CA A:CYS31 3.6 24.2 1.0
HG A:HG308 3.8 25.2 0.2
CB A:LEU36 3.9 16.8 1.0
O A:ASP32 4.1 12.8 1.0
CG A:LEU36 4.2 11.0 1.0
C A:ASP32 4.2 11.0 1.0
CA A:ALA33 4.2 23.1 1.0
N A:ALA33 4.3 14.0 1.0
N A:ASP32 4.3 17.2 1.0
C A:HIS30 4.7 20.6 1.0
O A:HOH364 4.9 27.0 1.0
CD1 A:LEU36 4.9 18.1 1.0
CA A:ASP32 4.9 15.9 1.0
CB A:ALA33 5.0 26.3 1.0

Mercury binding site 4 out of 10 in 1qz4

Go back to Mercury Binding Sites List in 1qz4
Mercury binding site 4 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg304

b:33.6
occ:0.30
O A:HOH399 1.8 14.4 1.0
O A:HOH391 1.9 16.3 1.0
ND1 A:HIS27 2.3 27.4 1.0
CG A:HIS27 3.2 12.6 1.0
CE1 A:HIS27 3.3 33.1 1.0
CB A:HIS27 3.5 14.0 1.0
CA A:HIS27 4.0 14.0 1.0
O A:HIS27 4.2 28.0 1.0
CD2 A:HIS27 4.4 17.2 1.0
NE2 A:HIS27 4.4 15.9 1.0
O A:HOH335 4.5 35.9 1.0
C A:HIS27 4.6 30.1 1.0
N A:SER154 4.6 21.6 1.0
C A:GLY153 4.8 20.2 1.0
CA A:GLY153 5.0 14.8 1.0

Mercury binding site 5 out of 10 in 1qz4

Go back to Mercury Binding Sites List in 1qz4
Mercury binding site 5 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg305

b:37.8
occ:0.24
O A:HOH377 1.5 9.0 1.0
OE1 A:GLU121 2.2 34.6 1.0
HG A:HG306 2.2 39.3 0.2
CD A:GLU121 3.2 27.8 1.0
O A:HOH371 3.5 27.3 1.0
OE2 A:GLU121 3.5 16.4 1.0
NE2 A:HIS122 4.3 38.7 1.0
CE1 A:HIS122 4.5 33.8 1.0
CG A:GLU121 4.6 12.1 1.0

Mercury binding site 6 out of 10 in 1qz4

Go back to Mercury Binding Sites List in 1qz4
Mercury binding site 6 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 6 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg306

b:39.3
occ:0.23
HG A:HG305 2.2 37.8 0.2
O A:HOH371 2.4 27.3 1.0
NE2 A:HIS122 2.4 38.7 1.0
OE1 A:GLU121 2.4 34.6 1.0
CE1 A:HIS122 2.6 33.8 1.0
O A:HOH377 3.1 9.0 1.0
CD A:GLU121 3.4 27.8 1.0
CD2 A:HIS122 3.8 31.8 1.0
ND1 A:HIS122 3.9 33.3 1.0
OE2 A:GLU121 4.0 16.4 1.0
CG A:GLU121 4.4 12.1 1.0
CG A:HIS122 4.5 32.9 1.0

Mercury binding site 7 out of 10 in 1qz4

Go back to Mercury Binding Sites List in 1qz4
Mercury binding site 7 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 7 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg307

b:32.2
occ:0.22
ND1 A:HIS182 2.2 17.9 1.0
O A:HOH320 2.2 32.8 1.0
O A:HOH325 2.8 23.0 1.0
O4 A:PO4214 2.8 45.0 1.0
O A:GLY186 2.9 17.7 1.0
CE1 A:HIS182 3.0 18.8 1.0
CG A:HIS182 3.3 17.4 1.0
CB A:HIS182 3.6 14.5 1.0
CA A:HIS182 4.0 14.5 1.0
C A:GLY186 4.1 9.7 1.0
CA A:GLY187 4.2 19.1 1.0
NE2 A:HIS182 4.2 17.7 1.0
P A:PO4214 4.2 40.0 1.0
CD2 A:HIS182 4.3 20.2 1.0
O A:HIS182 4.5 18.1 1.0
NH2 A:ARG97 4.5 36.2 1.0
N A:GLY187 4.6 11.7 1.0
CZ A:ARG97 4.6 39.8 1.0
O3 A:PO4214 4.6 42.1 1.0
C A:HIS182 4.7 17.5 1.0
NH1 A:ARG97 4.8 34.5 1.0
O A:HOH368 4.9 28.4 1.0

Mercury binding site 8 out of 10 in 1qz4

Go back to Mercury Binding Sites List in 1qz4
Mercury binding site 8 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 8 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg308

b:25.2
occ:0.16
SG A:CYS31 2.0 18.9 1.0
CD1 A:LEU25 2.3 20.4 1.0
CG A:LEU25 2.6 25.5 1.0
CB A:CYS31 3.0 11.8 1.0
O A:LEU21 3.4 9.9 1.0
CD2 A:LEU25 3.5 38.4 1.0
HG A:HG303 3.8 30.5 0.4
CB A:LEU25 3.9 20.8 1.0
C A:LEU21 4.0 8.6 1.0
CB A:LEU21 4.1 8.3 1.0
CD1 A:LEU36 4.1 18.1 1.0
O A:HOH349 4.2 31.4 1.0
CD2 A:LEU36 4.3 16.0 1.0
OG1 A:THR170 4.3 7.8 1.0
CA A:CYS31 4.4 24.2 1.0
CA A:LEU21 4.5 12.6 1.0
N A:CYS31 4.6 20.3 1.0
CG A:LEU36 4.6 11.0 1.0
CA A:LEU25 4.8 20.2 1.0
CB A:LEU36 4.8 16.8 1.0
CD2 A:LEU21 4.9 10.6 1.0
N A:LEU25 4.9 10.3 1.0
N A:VAL22 4.9 10.7 1.0
CG A:LEU21 5.0 6.7 1.0

Mercury binding site 9 out of 10 in 1qz4

Go back to Mercury Binding Sites List in 1qz4
Mercury binding site 9 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 9 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg309

b:36.2
occ:0.16
ND1 A:HIS122 2.6 33.3 1.0
O A:ARG118 2.8 22.5 1.0
CE1 A:HIS122 3.5 33.8 1.0
CG A:HIS122 3.5 32.9 1.0
CB A:HIS122 3.8 22.4 1.0
C A:ARG118 3.9 17.8 1.0
CA A:GLN119 3.9 14.9 1.0
O A:GLN119 4.2 12.8 1.0
CE2 A:PHE123 4.3 18.1 1.0
N A:GLN119 4.3 15.0 1.0
CD2 A:PHE123 4.4 12.6 1.0
C A:GLN119 4.4 12.2 1.0
N A:HIS122 4.5 16.0 1.0
NE2 A:HIS122 4.6 38.7 1.0
CD2 A:HIS122 4.7 31.8 1.0
CA A:HIS122 4.8 16.9 1.0
CB A:GLU121 4.9 13.9 1.0

Mercury binding site 10 out of 10 in 1qz4

Go back to Mercury Binding Sites List in 1qz4
Mercury binding site 10 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 10 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg310

b:33.3
occ:0.15
CD1 A:LEU172 3.1 19.6 1.0
O A:LEU172 3.4 8.9 1.0
CB A:ARG176 3.5 15.3 1.0
N A:ARG176 3.7 9.6 1.0
CA A:ARG176 3.7 12.8 1.0
CD2 A:LEU109 3.7 16.0 1.0
CD1 A:ILE113 3.8 8.9 1.0
CG A:LEU172 4.0 14.7 1.0
CG2 A:ILE175 4.1 13.5 1.0
CG A:ARG176 4.1 16.3 1.0
O A:HOH355 4.3 28.1 1.0
C A:ILE175 4.3 11.6 1.0
CB A:ILE175 4.3 9.5 1.0
C A:LEU172 4.4 8.8 1.0
CG A:LEU109 4.4 13.6 1.0
CD1 A:LEU109 4.4 13.0 1.0
CD1 A:ILE142 4.6 21.1 1.0
O A:ILE175 4.9 4.8 1.0
CA A:LEU172 4.9 7.7 1.0
CA A:ILE175 4.9 10.1 1.0
CB A:LEU172 5.0 11.8 1.0
CG1 A:ILE113 5.0 11.9 1.0

Reference:

Z.Otwinowski, D.M.Borek, Y.Chen, T.Skarina, A.Savchenko, A.Edwards. Structure of A Hypothetical Protein Ycfc Coded By Escherichia Coli Genome. To Be Published.
Page generated: Sun Aug 11 01:15:25 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy