Atomistry » Mercury » PDB 2esw-2o1f » 2is1
Atomistry »
  Mercury »
    PDB 2esw-2o1f »
      2is1 »

Mercury in PDB 2is1: Crystal Structure of Uvrd-Dna-SO4 Complex

Protein crystallography data

The structure of Crystal Structure of Uvrd-Dna-SO4 Complex, PDB code: 2is1 was solved by W.Yang, J.Y.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.76 / 2.90
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 152.451, 94.490, 136.443, 90.00, 90.00, 90.00
R / Rfree (%) 23.6 / 29.5

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Uvrd-Dna-SO4 Complex (pdb code 2is1). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 5 binding sites of Mercury where determined in the Crystal Structure of Uvrd-Dna-SO4 Complex, PDB code: 2is1:
Jump to Mercury binding site number: 1; 2; 3; 4; 5;

Mercury binding site 1 out of 5 in 2is1

Go back to Mercury Binding Sites List in 2is1
Mercury binding site 1 out of 5 in the Crystal Structure of Uvrd-Dna-SO4 Complex


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Uvrd-Dna-SO4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg681

b:84.3
occ:0.50
SG A:CYS322 2.6 56.6 1.0
NH1 A:ARG645 3.3 77.1 1.0
O A:CYS322 3.5 49.4 1.0
CB A:CYS322 3.5 53.0 1.0
O A:ALA323 3.5 50.6 1.0
C A:CYS322 3.6 50.4 1.0
OE1 A:GLU616 3.6 59.1 1.0
C A:ALA323 3.8 52.5 1.0
N A:ALA323 3.9 50.9 1.0
CA A:CYS322 4.1 50.9 1.0
CA A:ALA323 4.2 51.9 1.0
N A:PHE324 4.3 53.0 1.0
CD A:GLU616 4.4 61.1 1.0
CD A:ARG645 4.5 75.2 1.0
CG A:GLU616 4.5 60.2 1.0
CZ A:ARG645 4.5 78.0 1.0
CB A:GLU616 4.5 57.5 1.0
CA A:PHE324 4.7 55.4 1.0
CD1 A:PHE324 4.9 52.4 1.0
NE A:ARG645 5.0 77.0 1.0

Mercury binding site 2 out of 5 in 2is1

Go back to Mercury Binding Sites List in 2is1
Mercury binding site 2 out of 5 in the Crystal Structure of Uvrd-Dna-SO4 Complex


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of Uvrd-Dna-SO4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg682

b:75.7
occ:0.50
SG A:CYS640 2.4 62.8 1.0
OD1 A:ASN288 3.1 52.7 1.0
CB A:CYS640 3.3 62.1 1.0
CA A:CYS640 3.5 61.8 1.0
N A:CYS640 3.6 62.5 1.0
O A:HOH706 3.8 40.1 1.0
OG A:SER291 4.0 41.3 1.0
CG A:ASN288 4.0 49.0 1.0
C A:GLU639 4.1 62.2 1.0
CB A:SER291 4.1 38.2 1.0
OE1 A:GLU639 4.1 68.3 1.0
CA A:ASN288 4.3 43.9 1.0
O A:GLU639 4.4 61.5 1.0
CB A:GLU639 4.4 63.9 1.0
CB A:ASN288 4.5 46.4 1.0
CA A:GLU639 4.9 62.3 1.0
CD A:GLU639 5.0 68.4 1.0
O A:ASN288 5.0 43.3 1.0

Mercury binding site 3 out of 5 in 2is1

Go back to Mercury Binding Sites List in 2is1
Mercury binding site 3 out of 5 in the Crystal Structure of Uvrd-Dna-SO4 Complex


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of Uvrd-Dna-SO4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg683

b:0.9
occ:0.50
SG A:CYS52 2.4 55.2 1.0
CB A:CYS52 3.5 51.7 1.0
CZ A:ARG22 3.7 39.9 1.0
NE A:ARG22 3.7 37.1 1.0
ND2 A:ASN216 3.9 36.8 1.0
NH1 A:ARG22 4.0 43.7 1.0
CA A:CYS52 4.0 49.8 1.0
NH2 A:ARG22 4.1 40.7 1.0
CD A:ARG22 4.2 33.5 1.0
OG1 A:THR215 4.5 35.2 1.0
O A:GLU50 4.6 48.6 1.0
N A:CYS52 4.7 49.7 1.0
CG A:ASN216 4.8 36.5 1.0
OD1 A:ASN216 4.9 34.1 1.0
OG A:SER56 4.9 31.8 1.0

Mercury binding site 4 out of 5 in 2is1

Go back to Mercury Binding Sites List in 2is1
Mercury binding site 4 out of 5 in the Crystal Structure of Uvrd-Dna-SO4 Complex


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Crystal Structure of Uvrd-Dna-SO4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg681

b:0.5
occ:0.50
SG B:CYS322 2.7 85.2 1.0
O B:CYS322 2.9 76.3 1.0
CB B:CYS322 3.4 79.5 1.0
C B:CYS322 3.4 75.9 1.0
O B:ALA323 3.7 75.0 1.0
CG B:GLU616 3.7 69.0 1.0
C B:ALA323 3.9 76.4 1.0
CA B:CYS322 4.0 76.8 1.0
N B:ALA323 4.1 75.4 1.0
N B:PHE324 4.4 78.0 1.0
CA B:ALA323 4.4 75.9 1.0
CA B:PHE324 4.6 80.5 1.0
CB B:GLU616 4.7 72.6 1.0
CD B:GLU616 4.7 66.2 1.0
OE2 B:GLU616 4.9 63.2 1.0

Mercury binding site 5 out of 5 in 2is1

Go back to Mercury Binding Sites List in 2is1
Mercury binding site 5 out of 5 in the Crystal Structure of Uvrd-Dna-SO4 Complex


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Crystal Structure of Uvrd-Dna-SO4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg682

b:0.2
occ:0.50
SG B:CYS640 2.3 87.6 1.0
OD1 B:ASN288 2.4 73.4 1.0
CB B:CYS640 3.2 88.3 1.0
CA B:CYS640 3.5 87.1 1.0
CG B:ASN288 3.5 72.5 1.0
N B:CYS640 3.8 86.6 1.0
OG B:SER291 3.8 81.0 1.0
CA B:ASN288 3.9 72.8 1.0
OD1 B:ASP314 4.0 83.9 1.0
CB B:ASN288 4.1 72.7 1.0
C B:GLU639 4.2 86.0 1.0
O B:GLU639 4.3 85.2 1.0
N B:ASN288 4.6 73.0 1.0
ND2 B:ASN288 4.6 71.6 1.0
CB B:GLU639 4.6 86.2 1.0
CB B:SER291 4.8 78.9 1.0
O B:ASN288 4.8 72.4 1.0
C B:ASN288 4.9 72.7 1.0
CG B:ASP314 4.9 84.5 1.0
C B:CYS640 4.9 86.9 1.0
OD2 B:ASP314 4.9 84.5 1.0

Reference:

J.Y.Lee, W.Yang. Uvrd Helicase Unwinds Dna One Base Pair at A Time By A Two-Part Power Stroke. Cell(Cambridge,Mass.) V. 127 1349 2006.
ISSN: ISSN 0092-8674
PubMed: 17190599
DOI: 10.1016/J.CELL.2006.10.049
Page generated: Sun Aug 11 02:38:42 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy