Atomistry » Mercury » PDB 5lf8-6bvg » 5w31
Atomistry »
  Mercury »
    PDB 5lf8-6bvg »
      5w31 »

Mercury in PDB 5w31: Crystal Structure of Mutant Cj Ycei Protein (Cj-N48C) with Mercuribenzoic Acid Guest Structure

Protein crystallography data

The structure of Crystal Structure of Mutant Cj Ycei Protein (Cj-N48C) with Mercuribenzoic Acid Guest Structure, PDB code: 5w31 was solved by T.R.Huber, C.D.Snow, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.74 / 2.56
Space group P 6 2 2
Cell size a, b, c (Å), α, β, γ (°) 178.793, 178.793, 50.814, 90.00, 90.00, 120.00
R / Rfree (%) 21.3 / 24.1

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Mutant Cj Ycei Protein (Cj-N48C) with Mercuribenzoic Acid Guest Structure (pdb code 5w31). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the Crystal Structure of Mutant Cj Ycei Protein (Cj-N48C) with Mercuribenzoic Acid Guest Structure, PDB code: 5w31:

Mercury binding site 1 out of 1 in 5w31

Go back to Mercury Binding Sites List in 5w31
Mercury binding site 1 out of 1 in the Crystal Structure of Mutant Cj Ycei Protein (Cj-N48C) with Mercuribenzoic Acid Guest Structure


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Mutant Cj Ycei Protein (Cj-N48C) with Mercuribenzoic Acid Guest Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg304

b:0.7
occ:0.85
HG A:MBO304 0.0 0.7 0.9
CE1 A:MBO304 2.3 0.8 0.9
SG A:CYS48 2.4 85.0 1.0
CE2 A:MBO304 3.2 0.8 0.9
CE6 A:MBO304 3.3 0.7 0.9
N A:CYS48 3.4 79.5 1.0
CB A:CYS48 3.4 73.4 1.0
O A:ASN78 3.6 73.3 1.0
ND2 A:ASN78 3.9 84.4 1.0
CA A:CYS48 3.9 78.6 1.0
C A:GLY47 3.9 78.9 1.0
CG A:ASN78 4.2 84.9 1.0
CA A:GLY47 4.3 75.9 1.0
CB A:ASN78 4.4 74.0 1.0
CE3 A:MBO304 4.5 0.0 0.9
C A:ASN78 4.5 78.2 1.0
CE5 A:MBO304 4.6 0.7 0.9
O A:GLY47 4.6 88.8 1.0
C A:CYS48 4.7 78.7 1.0
O A:CYS48 4.9 80.7 1.0
OD1 A:ASN78 4.9 95.3 1.0
N A:GLY47 5.0 81.6 1.0

Reference:

T.R.Huber, E.C.Mcpherson, C.E.Keating, C.D.Snow. Installing Guest Molecules at Specific Sites Within Scaffold Protein Crystals. Bioconjug. Chem. V. 29 17 2018.
ISSN: ISSN 1520-4812
PubMed: 29232505
DOI: 10.1021/ACS.BIOCONJCHEM.7B00668
Page generated: Sun Aug 11 06:59:22 2024

Last articles

Au in 9H4V
Au in 7W2D
Au in 8DXY
Au in 8DXX
Au in 8DXZ
Au in 8DXW
Au in 8B0T
Au in 8DXV
Au in 7W2C
Au in 8B0S
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy