Atomistry » Mercury » PDB 7tfx-8p6u » 7tg4
Atomistry »
  Mercury »
    PDB 7tfx-8p6u »
      7tg4 »

Mercury in PDB 7tg4: [T:Ag+/HG2+:T--(PH11-PH7; 5S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 5S

Protein crystallography data

The structure of [T:Ag+/HG2+:T--(PH11-PH7; 5S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 5S, PDB code: 7tg4 was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 64.97 / 5.21
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 107.219, 107.219, 90.949, 90, 90, 120
R / Rfree (%) 26.3 / 32.9

Mercury Binding Sites:

The binding sites of Mercury atom in the [T:Ag+/HG2+:T--(PH11-PH7; 5S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 5S (pdb code 7tg4). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the [T:Ag+/HG2+:T--(PH11-PH7; 5S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 5S, PDB code: 7tg4:

Mercury binding site 1 out of 1 in 7tg4

Go back to Mercury Binding Sites List in 7tg4
Mercury binding site 1 out of 1 in the [T:Ag+/HG2+:T--(PH11-PH7; 5S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 5S


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of [T:Ag+/HG2+:T--(PH11-PH7; 5S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 5S within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg101

b:110.7
occ:1.00
N3 B:DT4 2.3 288.5 1.0
O4 A:DT12 2.6 126.3 1.0
O4 B:DT4 2.9 260.9 1.0
N3 A:DT12 3.0 125.9 1.0
C4 B:DT4 3.0 266.8 1.0
C4 A:DT12 3.2 126.0 1.0
C2 B:DT4 3.4 294.7 1.0
N1 B:DA5 3.5 261.6 1.0
O2 B:DT4 3.6 312.3 1.0
C2 B:DA5 3.6 273.6 1.0
N1 B:DA3 3.7 158.5 1.0
C6 B:DA3 3.8 157.1 1.0
N6 B:DA3 3.8 156.5 1.0
C6 B:DA5 3.9 238.8 1.0
N3 A:DT13 4.0 124.0 1.0
N3 B:DA5 4.1 222.5 1.0
C2 A:DT12 4.3 125.7 1.0
C5 B:DA5 4.3 227.7 1.0
O4 A:DT13 4.3 124.3 1.0
C2 B:DA3 4.3 159.1 1.0
C4 B:DA5 4.4 221.4 1.0
N6 B:DA5 4.4 242.2 1.0
C5 B:DT4 4.4 254.8 1.0
C5 B:DA3 4.4 156.3 1.0
C4 A:DT13 4.4 124.0 1.0
O4 A:DT11 4.5 135.2 1.0
N1 B:DT4 4.6 274.2 1.0
C5 A:DT12 4.6 126.0 1.0
O2 A:DT12 4.6 125.8 1.0
C2 A:DT13 4.7 123.8 1.0
N3 A:DT11 4.8 141.5 1.0
O2 A:DT13 4.8 123.9 1.0
C4 A:DT11 4.9 147.2 1.0
C4 B:DA3 4.9 157.1 1.0
N3 B:DA3 5.0 158.4 1.0
C6 B:DT4 5.0 248.3 1.0

Reference:

B.Lu, Y.P.Ohayon, R.Sha, K.Woloszyn, L.Rothschild, S.Wind, W.Hendrickson, C.Mao, N.C.Seeman, S.Vecchioni. Crystallographic pH Titration of Silver and Mercury Mediated Dna Base Pairs To Be Published.
Page generated: Sun Aug 11 08:51:16 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy