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Mercury in PDB 7tg4: [T:Ag+/HG2+:T--(PH11-PH7; 5S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 5S

Protein crystallography data

The structure of [T:Ag+/HG2+:T--(PH11-PH7; 5S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 5S, PDB code: 7tg4 was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 64.97 / 5.21
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 107.219, 107.219, 90.949, 90, 90, 120
R / Rfree (%) 26.3 / 32.9

Mercury Binding Sites:

The binding sites of Mercury atom in the [T:Ag+/HG2+:T--(PH11-PH7; 5S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 5S (pdb code 7tg4). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the [T:Ag+/HG2+:T--(PH11-PH7; 5S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 5S, PDB code: 7tg4:

Mercury binding site 1 out of 1 in 7tg4

Go back to Mercury Binding Sites List in 7tg4
Mercury binding site 1 out of 1 in the [T:Ag+/HG2+:T--(PH11-PH7; 5S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 5S


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of [T:Ag+/HG2+:T--(PH11-PH7; 5S in Metals)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 with Ag+ and HG2+ For 5S within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg101

b:110.7
occ:1.00
N3 B:DT4 2.3 288.5 1.0
O4 A:DT12 2.6 126.3 1.0
O4 B:DT4 2.9 260.9 1.0
N3 A:DT12 3.0 125.9 1.0
C4 B:DT4 3.0 266.8 1.0
C4 A:DT12 3.2 126.0 1.0
C2 B:DT4 3.4 294.7 1.0
N1 B:DA5 3.5 261.6 1.0
O2 B:DT4 3.6 312.3 1.0
C2 B:DA5 3.6 273.6 1.0
N1 B:DA3 3.7 158.5 1.0
C6 B:DA3 3.8 157.1 1.0
N6 B:DA3 3.8 156.5 1.0
C6 B:DA5 3.9 238.8 1.0
N3 A:DT13 4.0 124.0 1.0
N3 B:DA5 4.1 222.5 1.0
C2 A:DT12 4.3 125.7 1.0
C5 B:DA5 4.3 227.7 1.0
O4 A:DT13 4.3 124.3 1.0
C2 B:DA3 4.3 159.1 1.0
C4 B:DA5 4.4 221.4 1.0
N6 B:DA5 4.4 242.2 1.0
C5 B:DT4 4.4 254.8 1.0
C5 B:DA3 4.4 156.3 1.0
C4 A:DT13 4.4 124.0 1.0
O4 A:DT11 4.5 135.2 1.0
N1 B:DT4 4.6 274.2 1.0
C5 A:DT12 4.6 126.0 1.0
O2 A:DT12 4.6 125.8 1.0
C2 A:DT13 4.7 123.8 1.0
N3 A:DT11 4.8 141.5 1.0
O2 A:DT13 4.8 123.9 1.0
C4 A:DT11 4.9 147.2 1.0
C4 B:DA3 4.9 157.1 1.0
N3 B:DA3 5.0 158.4 1.0
C6 B:DT4 5.0 248.3 1.0

Reference:

B.Lu, Y.P.Ohayon, R.Sha, K.Woloszyn, L.Rothschild, S.Wind, W.Hendrickson, C.Mao, N.C.Seeman, S.Vecchioni. Crystallographic pH Titration of Silver and Mercury Mediated Dna Base Pairs To Be Published.
Page generated: Fri Aug 8 11:30:47 2025

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