Mercury in PDB 8dxf: [C:HG2+/Ag+:C--pH 9] Metal-Mediated Dna Base Pair in Tensegrity Triangle in Ag+ and HG2+ Solution

The structure of [C:HG2+/Ag+:C--pH 9] Metal-Mediated Dna Base Pair in Tensegrity Triangle in Ag+ and HG2+ Solution, PDB code: 8dxf was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.57 / 4.29
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	105.914, 105.914, 92.512, 90, 90, 120
R / Rfree (%)	21.7 / 23.9

The binding sites of Mercury atom in the [C:HG2+/Ag+:C--pH 9] Metal-Mediated Dna Base Pair in Tensegrity Triangle in Ag+ and HG2+ Solution (pdb code 8dxf). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the [C:HG2+/Ag+:C--pH 9] Metal-Mediated Dna Base Pair in Tensegrity Triangle in Ag+ and HG2+ Solution, PDB code: 8dxf:

Mercury binding site 1 out of 1 in the [C:HG2+/Ag+:C--pH 9] Metal-Mediated Dna Base Pair in Tensegrity Triangle in Ag+ and HG2+ Solution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of [C:HG2+/Ag+:C--pH 9] Metal-Mediated Dna Base Pair in Tensegrity Triangle in Ag+ and HG2+ Solution within 5.0Å range: probe atom residue distance (Å) B Occ B:Hg101 b:167.1 occ:0.42 N4 B:DC4 2.7 145.8 1.0 N4 A:DC12 2.9 234.5 1.0 N6 B:DA3 3.0 178.5 1.0 N3 B:DC4 3.3 147.9 1.0 C4 B:DC4 3.4 146.1 1.0 C6 B:DA3 3.5 177.6 1.0 N7 B:DA3 3.7 174.0 1.0 C5 B:DA3 3.7 175.6 1.0 O4 A:DT11 3.8 229.9 1.0 C4 A:DC12 4.0 229.2 1.0 C4 A:DT11 4.1 238.1 1.0 O4 A:DT13 4.1 265.9 1.0 N1 B:DA5 4.2 291.5 1.0 C5 A:DC12 4.3 226.8 1.0 N6 B:DA5 4.3 270.8 1.0 C5 A:DT11 4.4 264.6 1.0 C7 A:DT11 4.4 272.1 1.0 N1 B:DA3 4.4 178.9 1.0 C2 B:DC4 4.5 148.5 1.0 C6 B:DA5 4.6 267.6 1.0 N3 A:DT11 4.7 227.6 1.0 C8 B:DA3 4.7 172.5 1.0 C5 B:DC4 4.8 144.7 1.0 C4 B:DA3 4.8 175.1 1.0

B.Lu, Y.P.Ohayon, K.Woloszyn, C.F.Yang, J.B.Yoder, L.J.Rothschild, S.J.Wind, W.A.Hendrickson, C.Mao, N.C.Seeman, J.W.Canary, R.Sha, S.Vecchioni. Heterobimetallic Base Pair Programming in Designer 3D Dna Crystals. J.Am.Chem.Soc. 2023.
ISSN: ESSN 1520-5126
PubMed: 37530628
DOI: 10.1021/JACS.3C05478