Mercury in PDB 7edm: Crystal Structure of the Eukaryotic Ribosomal Decoding Site in Complex with G418 and Hg(II)

The structure of Crystal Structure of the Eukaryotic Ribosomal Decoding Site in Complex with G418 and Hg(II), PDB code: 7edm was solved by J.Kondo, C.Suzuki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.74 / 2.81
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	31.429, 97.487, 47.548, 90, 90, 90
R / Rfree (%)	16.4 / 22.9

The binding sites of Mercury atom in the Crystal Structure of the Eukaryotic Ribosomal Decoding Site in Complex with G418 and Hg(II) (pdb code 7edm). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Crystal Structure of the Eukaryotic Ribosomal Decoding Site in Complex with G418 and Hg(II), PDB code: 7edm:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in the Crystal Structure of the Eukaryotic Ribosomal Decoding Site in Complex with G418 and Hg(II)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of the Eukaryotic Ribosomal Decoding Site in Complex with G418 and Hg(II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg201 b:49.6 occ:1.00 N3 B:U29 2.2 19.6 1.0 N3 A:U20 2.2 18.0 1.0 O4 B:U29 3.0 19.6 1.0 C4 B:U29 3.0 24.3 1.0 C2 B:U29 3.1 23.3 1.0 C2 A:U20 3.1 19.0 1.0 C4 A:U20 3.1 21.9 1.0 O4 A:U20 3.1 21.9 1.0 O2 A:U20 3.1 20.6 1.0 O2 B:U29 3.2 25.3 1.0 N3 A:C21 3.2 19.4 1.0 N3 B:C30 3.3 20.4 1.0 C4 B:C30 3.5 19.1 1.0 C2 A:C21 3.5 22.8 1.0 C4 A:C21 3.6 15.9 1.0 C2 B:C30 3.6 21.6 1.0 O2 A:C21 3.9 17.4 1.0 N4 A:C21 3.9 18.3 1.0 N4 B:C30 4.0 22.8 1.0 C5 B:C30 4.0 19.7 1.0 N1 B:C30 4.1 22.7 1.0 O2 B:C30 4.1 22.5 1.0 N1 B:G28 4.1 20.4 1.0 O B:HOH201 4.1 12.8 1.0 N1 A:C21 4.2 18.3 1.0 C6 B:C30 4.2 21.1 1.0 C5 A:C21 4.3 20.9 1.0 C5 B:U29 4.3 27.7 1.0 N1 B:U29 4.3 21.9 1.0 N1 A:U20 4.4 22.9 1.0 N1 A:G19 4.4 19.9 1.0 C5 A:U20 4.5 19.6 1.0 O6 B:G28 4.5 21.9 1.0 C6 A:C21 4.5 18.5 1.0 C6 B:G28 4.6 22.6 1.0 N2 B:G28 4.8 23.0 1.0 C2 B:G28 4.8 21.3 1.0 N2 A:G19 4.8 19.0 1.0 C6 B:U29 4.8 23.1 1.0 C6 A:U20 4.9 22.7 1.0 C1' B:C30 5.0 28.9 1.0 O6 A:G19 5.0 23.5 1.0

Mercury binding site 2 out of 2 in the Crystal Structure of the Eukaryotic Ribosomal Decoding Site in Complex with G418 and Hg(II)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of the Eukaryotic Ribosomal Decoding Site in Complex with G418 and Hg(II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg202 b:52.8 occ:0.74 N3 B:U43 2.2 30.6 1.0 N3 A:U6 2.3 30.4 1.0 O4 A:U6 2.7 29.3 1.0 C4 A:U6 2.8 34.2 1.0 C2 B:U43 3.0 27.3 1.0 C4 B:U43 3.0 25.3 1.0 O4 B:U43 3.1 25.4 1.0 O2 B:U43 3.1 25.6 1.0 N3 B:C44 3.3 28.2 1.0 N3 A:C7 3.3 29.5 1.0 C2 A:U6 3.3 30.3 1.0 C4 A:C7 3.4 30.3 1.0 O2 A:U6 3.6 31.6 1.0 C2 A:C7 3.6 28.1 1.0 C4 B:C44 3.6 25.5 1.0 C2 B:C44 3.7 26.5 1.0 N4 A:C7 3.9 29.5 1.0 C5 A:C7 3.9 28.4 1.0 O B:HOH202 3.9 22.7 1.0 N4 B:C44 4.0 20.4 1.0 O2 B:C44 4.0 25.8 1.0 N1 A:C7 4.1 27.0 1.0 O2 A:C7 4.1 31.2 1.0 N1 A:G5 4.2 26.7 1.0 C6 A:C7 4.2 29.7 1.0 C5 A:U6 4.2 36.7 1.0 N1 B:U43 4.3 26.1 1.0 C5 B:C44 4.3 21.7 1.0 N1 B:C44 4.3 28.6 1.0 C5 B:U43 4.3 22.2 1.0 O6 A:G5 4.4 30.6 1.0 N1 B:G42 4.5 25.0 1.0 N1 A:U6 4.5 31.9 1.0 C6 A:G5 4.6 27.7 1.0 C6 B:C44 4.6 24.3 1.0 C6 B:U43 4.8 26.1 1.0 C6 A:U6 4.8 34.0 1.0 N2 B:G42 5.0 24.4 1.0 C2 A:G5 5.0 27.7 1.0 O6 B:G42 5.0 25.0 1.0

J.Kondo, C.Suzuki. Crystal Structure of the Eukaryotic Ribosomal Decoding Site in Complex with G418 and Hg(II) To Be Published.