Mercury in PDB 7sd6: [T:HG2+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

The structure of [T:HG2+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sd6 was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.65 / 3.53
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	106.625, 106.625, 92.368, 90, 90, 120
R / Rfree (%)	20.4 / 24.5

The binding sites of Mercury atom in the [T:HG2+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 7sd6). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the [T:HG2+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sd6:

Mercury binding site 1 out of 1 in the [T:HG2+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of [T:HG2+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range: probe atom residue distance (Å) B Occ B:Hg101 b:168.4 occ:0.30 N3 B:DT4 2.1 221.1 1.0 N3 A:DT12 2.1 234.3 1.0 O4 A:DT12 2.5 230.5 1.0 C4 A:DT12 2.7 231.9 1.0 C4 B:DT4 2.8 209.8 1.0 O4 B:DT4 2.8 199.2 1.0 C2 B:DT4 3.1 231.7 1.0 C2 A:DT12 3.3 233.7 1.0 O2 B:DT4 3.3 241.5 1.0 O2 A:DT12 3.6 234.2 1.0 N1 B:DA3 3.6 196.7 1.0 C2 B:DA5 3.7 232.4 1.0 N1 B:DA5 3.7 225.8 1.0 N6 B:DA3 3.7 181.0 1.0 N3 A:DT13 3.8 232.0 1.0 C6 B:DA3 3.8 189.7 1.0 O4 A:DT13 4.0 227.8 1.0 C4 A:DT13 4.0 229.7 1.0 C5 A:DT12 4.1 230.1 1.0 C5 B:DT4 4.2 212.3 1.0 N3 B:DA5 4.3 236.3 1.0 C6 B:DA5 4.3 231.0 1.0 C2 B:DA3 4.3 205.6 1.0 N1 B:DT4 4.3 228.4 1.0 N1 A:DT12 4.4 229.4 1.0 C2 A:DT13 4.5 234.2 1.0 C5 B:DA3 4.6 194.7 1.0 C6 A:DT12 4.7 228.6 1.0 C4 B:DA5 4.7 242.5 1.0 C6 B:DT4 4.7 219.1 1.0 O2 A:DT13 4.8 236.2 1.0 O4 A:DT11 4.8 237.5 1.0 C5 B:DA5 4.8 240.1 1.0 N6 B:DA5 4.9 226.6 1.0 C5 A:DT13 4.9 228.1 1.0

S.Vecchioni, B.Lu, R.Sha, Y.P.Ohayon, J.Yoder, K.Woloszyn, W.Bernfeld, W.Hendrickson, L.Rothschild, C.Mao, S.Wind, N.C.Seeman. Metal-Mediated Dna Nanotechnology in 3D: Reengineering the Semantomorphic Alphabet To Be Published.