Mercury in PDB 7sdi: [T:HG2+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

The structure of [T:HG2+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdi was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.67 / 3.58
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	105.972, 105.972, 93.052, 90, 90, 120
R / Rfree (%)	23.3 / 25.5

The binding sites of Mercury atom in the [T:HG2+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 7sdi). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the [T:HG2+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdi:

Mercury binding site 1 out of 1 in the [T:HG2+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of [T:HG2+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range: probe atom residue distance (Å) B Occ B:Hg101 b:124.8 occ:0.20 N3 B:DU4 2.1 305.0 1.0 N3 A:DT12 2.1 266.0 1.0 O4 A:DT12 2.3 263.4 1.0 C4 A:DT12 2.6 262.1 1.0 O4 B:DU4 2.8 284.1 1.0 C4 B:DU4 2.8 292.4 1.0 N1 B:DA3 3.3 287.3 1.0 C2 B:DU4 3.3 305.9 1.0 C2 A:DT12 3.3 262.3 1.0 C2 B:DA5 3.6 334.4 1.0 O2 B:DU4 3.6 310.2 1.0 C6 B:DA3 3.6 275.4 1.0 N3 A:DT13 3.6 226.6 1.0 N6 B:DA3 3.7 261.0 1.0 N1 B:DA5 3.7 337.1 1.0 O2 A:DT12 3.7 265.0 1.0 C2 B:DA3 4.0 292.6 1.0 N3 B:DA5 4.0 329.9 1.0 C4 A:DT13 4.0 220.9 1.0 C5 A:DT12 4.0 254.9 1.0 O4 A:DT13 4.0 219.5 1.0 C6 B:DA5 4.2 344.1 1.0 C2 A:DT13 4.2 228.1 1.0 C5 B:DU4 4.3 282.9 1.0 C4 B:DA5 4.4 334.9 1.0 N1 A:DT12 4.5 253.2 1.0 C5 B:DA3 4.5 272.1 1.0 O2 A:DT13 4.5 232.9 1.0 C5 B:DA5 4.5 341.7 1.0 N1 B:DU4 4.6 296.6 1.0 C6 A:DT12 4.7 250.2 1.0 O4 A:DT11 4.7 237.0 1.0 N3 A:DT11 4.8 235.9 1.0 N3 B:DA3 4.8 288.9 1.0 N6 B:DA5 4.9 345.8 1.0 C5 A:DT13 4.9 215.5 1.0 C4 B:DA3 4.9 280.3 1.0 C6 B:DU4 5.0 284.8 1.0

S.Vecchioni, B.Lu, R.Sha, Y.P.Ohayon, J.Yoder, K.Woloszyn, W.Bernfeld, W.Hendrickson, L.Rothschild, C.Mao, S.Wind, N.C.Seeman. Metal-Mediated Dna Nanotechnology in 3D: Reengineering the Semantomorphic Alphabet To Be Published.