Mercury in PDB 7sdy: [C:HG2+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

The structure of [C:HG2+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdy was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.82 / 4.45
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	106.63, 106.63, 93.346, 90, 90, 120
R / Rfree (%)	17.6 / 19.1

The binding sites of Mercury atom in the [C:HG2+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 7sdy). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the [C:HG2+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdy:

Mercury binding site 1 out of 1 in the [C:HG2+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of [C:HG2+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range: probe atom residue distance (Å) B Occ B:Hg101 b:105.4 occ:0.10 N3 A:DC12 2.1 209.1 1.0 N3 B:DU4 2.1 234.3 1.0 N4 A:DC12 2.3 209.6 1.0 C4 A:DC12 2.6 208.4 1.0 C2 B:DU4 3.1 248.6 1.0 C4 B:DU4 3.1 225.3 1.0 O2 B:DU4 3.2 256.8 1.0 O4 B:DU4 3.3 220.4 1.0 C2 A:DC12 3.3 208.2 1.0 C2 B:DA5 3.4 237.7 1.0 N1 B:DA5 3.4 235.2 1.0 N1 B:DA3 3.7 214.8 1.0 O2 A:DC12 3.8 209.1 1.0 N3 A:DT13 3.8 211.6 1.0 N3 B:DA5 3.9 225.2 1.0 C6 B:DA3 3.9 214.5 1.0 N6 B:DA3 3.9 210.2 1.0 C6 B:DA5 4.0 232.4 1.0 C5 A:DC12 4.0 206.6 1.0 C4 A:DT13 4.1 210.2 1.0 O4 A:DT13 4.1 210.6 1.0 C4 B:DA5 4.3 234.6 1.0 C2 B:DA3 4.3 222.2 1.0 C2 A:DT13 4.4 212.0 1.0 C5 B:DA5 4.4 234.6 1.0 N1 A:DC12 4.5 206.3 1.0 N1 B:DU4 4.5 249.8 1.0 C5 B:DU4 4.5 229.8 1.0 N6 B:DA5 4.6 235.1 1.0 O2 A:DT13 4.6 213.8 1.0 C6 A:DC12 4.7 205.6 1.0 N3 A:DT11 4.8 228.6 1.0 C5 B:DA3 4.8 219.2 1.0 O4 A:DT11 4.8 228.7 1.0 C5 A:DT13 5.0 208.7 1.0

S.Vecchioni, B.Lu, R.Sha, Y.P.Ohayon, J.Yoder, K.Woloszyn, W.Bernfeld, W.Hendrickson, L.Rothschild, C.Mao, S.Wind, N.C.Seeman. Metal-Mediated Dna Nanotechnology in 3D: Reengineering the Semantomorphic Alphabet To Be Published.